The emergence of antibiotic-resistant bacteria has become a critical health concern; hence, the design of new agents which will combat the problem of developing resistance to antibiotics is of major interest. The antibiotic novobiocin is produced by Streptomyces spheroides and is a part of the aminocoumarin family of antibiotics whose mode of action is the inhibition of the type II DNA topoisomerase DNA gyrase. The structure of novobiocin consists of three moieties: a noviose sugar, a 3-substituted coumarin ring and a prenylated 4-hydroxybenzoic acid moiety. It is suggested that the noviose sugar moiety is important for recognition of the target gyrB; therefore, it is of great interest to study the enzymes involved in the biosynthesis and subsequent reactions of the noviose moiety of novobiocin. The focus of this research proprosal is divided into three specific aims: 1) characterization and substrate specificity study of NovM, the putative glycosyltransferase for glycosylation of the novobiocic acid by TDP-noviose 2) characterization and specificity studies of NovP and NovN, the noviose tailoring enzymes in the biosynthesis of novobiocin and 3) the in vitro reconstitution of TDP-noviose biosynthesis. The genes encoding NovT,U,W,S,M,P and N will be cloned from genomic DNA isolated from Streptomyces spheroides, the proteins expressed in E.coli and purified by Ni (II)-affinity chromatography. Characterization of enzyme activity in each case will be accomplished using established assays. NovM, P and N will be assayed for activity with normal and modified mbstrates using established HPLC assays. It is anticipated that these studies will advance the development of biosynthetic combinatorial libraries of sugar-modified novobiocin analogs. ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
1F32AI054007-01
Application #
6583459
Study Section
Special Emphasis Panel (ZRG1-F04 (20))
Program Officer
Korpela, Jukka K
Project Start
2003-01-01
Project End
2005-12-31
Budget Start
2003-01-01
Budget End
2003-12-31
Support Year
1
Fiscal Year
2003
Total Cost
$46,192
Indirect Cost
Name
Harvard University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
047006379
City
Boston
State
MA
Country
United States
Zip Code
02115
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Gomez Garcia, Inmaculada; Freel Meyers, Caren L; Walsh, Christopher T et al. (2008) Crystallization and preliminary X-ray analysis of the O-carbamoyltransferase NovN from the novobiocin-biosynthetic cluster of Streptomyces spheroides. Acta Crystallogr Sect F Struct Biol Cryst Commun 64:1000-2
Stevenson, Clare E M; Freel Meyers, Caren L; Walsh, Christopher T et al. (2007) Crystallization and preliminary X-ray analysis of the O-methyltransferase NovP from the novobiocin-biosynthetic cluster of Streptomyces spheroides. Acta Crystallogr Sect F Struct Biol Cryst Commun 63:236-8
Jakimowicz, Piotr; Tello, Monica; Meyers, Caren L Freel et al. (2006) The 1.6-A resolution crystal structure of NovW: a 4-keto-6-deoxy sugar epimerase from the novobiocin biosynthetic gene cluster of Streptomyces spheroides. Proteins 63:261-5
Tello, Monica; Jakimowicz, Piotr; Errey, James C et al. (2006) Characterisation of Streptomyces spheroides NovW and revision of its functional assignment to a dTDP-6-deoxy-D-xylo-4-hexulose 3-epimerase. Chem Commun (Camb) :1079-81
Pacholec, Michelle; Freel Meyers, Caren L; Oberthur, Markus et al. (2005) Characterization of the aminocoumarin ligase SimL from the simocyclinone pathway and tandem incubation with NovM,P,N from the novobiocin pathway. Biochemistry 44:4949-56
Freel Meyers, Caren L; Oberthur, Markus; Xu, Hui et al. (2004) Characterization of NovP and NovN: completion of novobiocin biosynthesis by sequential tailoring of the noviosyl ring. Angew Chem Int Ed Engl 43:67-70
Pi, Na; Meyers, Caren L Freel; Pacholec, Michelle et al. (2004) Mass spectrometric characterization of a three-enzyme tandem reaction for assembly and modification of the novobiocin skeleton. Proc Natl Acad Sci U S A 101:10036-41
Freel Meyers, Caren L; Oberthur, Markus; Heide, Lutz et al. (2004) Assembly of dimeric variants of coumermycins by tandem action of the four biosynthetic enzymes CouL, CouM, CouP, and NovN. Biochemistry 43:15022-36
Jakimowicz, Piotr; Freel Meyers, Caren L; Walsh, Christopher T et al. (2003) Crystallization and preliminary X-ray studies on the putative dTDP sugar epimerase NovW from the novobiocin biosynthetic cluster of Streptomyces spheroides. Acta Crystallogr D Biol Crystallogr 59:1507-9