Peroxisomes are ubiquitous subcellular organelles intimately involved in multiple metabolic pathways in eukaryotic cells. The impairment of peroxisomal protein import and biogenesis is responsible for many human peroxisomal disorders (Zellweger's syndrome, Hyperpipecolic acidaemia, infantile Refsum's disease and neonatal adrenoleukodystrophy) which can be very debilitating and lethal. Our long term interest is in understanding the mechanism by which matrix and membrane proteins are transported from their site of synthesis, in the cytosol, to the peroxisomes. Two of the peroxisomal targeting signals, PTS1 and PTS2, involved in the import of peroxisomal matrix proteins, and the PTS1 receptor, have been identified and characterized. However, the other cytosolic and membrane components involved in peroxisomal protein import are unknown at present. We hope to use a combination of biochemical and genetic strategies to identify the other components involved in this import process. These studies will shed light on the biogenesis of an important subcellular organelle, and are also relevant to the human disorders mentioned above.
The specific aims of the proposal are listed below. 1. To study the role of the P. pastoris PAS8 protein as the PTS1 receptor 2. Quantitation of peroxisomal import in vitro via the PTS1 pathway 3. Identification of yeast cytosolic factors required for peroxisomal import 4. Development of alternative cytosol-dependent in vitro import systems in yeast 5. To investigate the targeting and topology of peroxisomal membrane proteins 6. To study the role of the P. pastoris PAS1 and PAS5 proteins in peroxisome biogenesis

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
2R01DK041737-06
Application #
2141891
Study Section
Molecular Cytology Study Section (CTY)
Project Start
1990-05-10
Project End
1999-04-30
Budget Start
1995-05-01
Budget End
1996-04-30
Support Year
6
Fiscal Year
1995
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Wang, Wei; Xia, Zhijie; Farré, Jean-Claude et al. (2018) TRIM37 deficiency induces autophagy through deregulating the MTORC1-TFEB axis. Autophagy 14:1574-1585
Zientara-Rytter, Katarzyna; Ozeki, Katharine; Nazarko, Taras Y et al. (2018) Pex3 and Atg37 compete to regulate the interaction between the pexophagy receptor, Atg30, and the Hrr25 kinase. Autophagy 14:368-384
Zientara-Rytter, Katarzyna; Subramani, Suresh (2018) AIM/LIR-based fluorescent sensors-new tools to monitor mAtg8 functions. Autophagy 14:1074-1078
Farré, Jean-Claude; Kramer, Michael; Ideker, Trey et al. (2017) Active Interaction Mapping as a tool to elucidate hierarchical functions of biological processes. Autophagy 13:1248-1249
Kramer, Michael H; Farré, Jean-Claude; Mitra, Koyel et al. (2017) Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy. Mol Cell 65:761-774.e5
Farré, Jean-Claude; Carolino, Krypton; Stasyk, Oleh V et al. (2017) A New Yeast Peroxin, Pex36, a Functional Homolog of Mammalian PEX16, Functions in the ER-to-Peroxisome Traffic of Peroxisomal Membrane Proteins. J Mol Biol 429:3743-3762
Wang, Wei; Xia, Zhi-Jie; Farré, Jean-Claude et al. (2017) TRIM37, a novel E3 ligase for PEX5-mediated peroxisomal matrix protein import. J Cell Biol 216:2843-2858
Agrawal, Gaurav; Shang, Helen H; Xia, Zhi-Jie et al. (2017) Functional regions of the peroxin Pex19 necessary for peroxisome biogenesis. J Biol Chem 292:11547-11560
Agrawal, Gaurav; Subramani, Suresh (2016) De novo peroxisome biogenesis: Evolving concepts and conundrums. Biochim Biophys Acta 1863:892-901
Zientara-Rytter, Katarzyna; Subramani, Suresh (2016) Autophagic degradation of peroxisomes in mammals. Biochem Soc Trans 44:431-40

Showing the most recent 10 out of 84 publications