The specific aims of this proposal are to 1) explore the power and subleties of isotope effects as a tool for determining the mechanism(s) of enzymatically catalyzed reactions, and 2) to use both intramolecular and intermolecular isotope effects to study the mechanism of specific cytochrome P-450 catalyzed reactions. Numerous studies have linked the metabolic activity of these enzymes to sucg pathological conditions as kidney and liver dysfunction, teratogenesis and carcinogenesis. The ability of thes enzymes to bioactivate various substrates, e.g. polycyclic aromatic hydrocarbons, to reactive electrophilic intermediates which can covalently bind to critical biomacromolecules appears to be the basis for many of the observed toxicities. Thus an understanding of the mechanisms by which these enzymes catalyze various oxidative reactions and the factors which modulate them is crucial to the eventual understanding of the relationship between toxic liability and substrate structure. It is well known that the magnitude of an observed isotope effect in an enzymatically catalyzed reaction is in general much less than the intrinsic isotope effect for the bond breaking step. It is the later quantity however, which provides information on the transition state for the reaction. Therefore the intent of this application is to clarify how various factors like stereochemistry, branching, masking and secondary isotope effects might cause the magnitude of an observed isotope effect to deviate from the intrinsic isotope effect. Once this dependence is understood, knowledge can be gained not only on the mechanism of the specific reaction being studied but also on the nature of the reactivity of the cytochrome P-450 system. Specifically, isotope effects, isotopic labeling and the parameters outlined above will be used to explore; a) stereoselective effects associated with the omega-1 hydroxylation of octane and hexane b) the mechanism of the aromatic hydroxylation of warfarin c) the relationship between the extent of masking of an intrinsic isotope effect and the distance between two oxidatively sensitive like groupings d) the determination of the maximum intrinsic isotopr effects for the oxidation of a variety of carbon-hydrogen bonds in different electronic and steric environments e) the mechanism of N-dealkylation using substituted N-methylcarbazoles as substrates. All the studies will utilize various purified forms of cytochrome P-450 isolated from rat or the rabbit. The mmethodology for achieving the goals of the study will be quantitative mass spectrometry using stable isotopes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM036922-06
Application #
3291581
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1986-07-01
Project End
1995-06-30
Budget Start
1991-07-01
Budget End
1992-06-30
Support Year
6
Fiscal Year
1991
Total Cost
Indirect Cost
Name
University of Washington
Department
Type
Schools of Pharmacy
DUNS #
135646524
City
Seattle
State
WA
Country
United States
Zip Code
98195
Iyer, K R; Jones, J P; Darbyshire, J F et al. (1997) Intramolecular isotope effects for benzylic hydroxylation of isomeric xylenes and 4,4'-dimethylbiphenyl by cytochrome P450: relationship between distance of methyl groups and masking of the intrinsic isotope effect. Biochemistry 36:7136-43
Darbyshire, J F; Iyer, K R; Grogan, J et al. (1996) Substrate probe for the mechanism of aromatic hydroxylation catalyzed by cytochrome P450. Drug Metab Dispos 24:1038-45
Carlson, T J; Jones, J P; Peterson, L et al. (1995) Stereoselectivity and isotope effects associated with cytochrome P450-catalyzed oxidation of (S)-nicotine. The possibility of initial hydrogen atom abstraction in the formation of the delta 1', 5-nicotinium ion. Drug Metab Dispos 23:749-56
Kunze, K L; Trager, W F (1993) Isoform-selective mechanism-based inhibition of human cytochrome P450 1A2 by furafylline. Chem Res Toxicol 6:649-56
Korzekwa, K R; Trager, W F; Mancewicz, J et al. (1993) Studies on the mechanism of aromatase and other cytochrome P450 mediated deformylation reactions. J Steroid Biochem Mol Biol 44:367-73
Korzekwa, K R; Trager, W F; Smith, S J et al. (1991) Theoretical studies on the mechanism of conversion of androgens to estrogens by aromatase. Biochemistry 30:6155-62
Ottoboni, S; Carlson, T J; Trager, W F et al. (1990) Studies on the cytochrome P-450 catalyzed ring alpha-carbon oxidation of the nigrostriatal toxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). Chem Res Toxicol 3:423-7
Korzekwa, K; Howald, W N; Trager, W F (1990) The use of Brauman's least squares approach for the quantification of deuterated chlorophenols. Biomed Environ Mass Spectrom 19:211-7
Korzekwa, K R; Trager, W F; Nagata, K et al. (1990) Isotope effect studies on the mechanism of the cytochrome P-450IIA1-catalyzed formation of delta 6-testosterone from testosterone. Drug Metab Dispos 18:974-9
Jones, J P; Rettie, A E; Trager, W F (1990) Intrinsic isotope effects suggest that the reaction coordinate symmetry for the cytochrome P-450 catalyzed hydroxylation of octane is isozyme independent. J Med Chem 33:1242-6

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