Protein tyrosine kinases (PTKs) play a key role in cell signaling and regulating biological processes such as proliferation, differentiation, and apoptosis. More than 164 protein kinases have been implicated in diseases including cancer, inflammation, diabetes, hypertension, angiogenesis, and immune disease. Directly or indirectly, over 400 diseases have been linked to protein kinases. In light of this, PTKs have become attractive targets for drug development in both academia and the pharmaceutical industry. Despite the large number of targets, however, the FDA-approved kinase inhibitiors as well as those in clinical development target only a handful of well-known kinases providing inhibition via competition with ATP. Clearly, obtaining potent and selective ATP-competitive compounds against a wide-variety of tyrosine kinases has been difficult. This proposal aims to develop general and robust tools for the rapid identification of substrate-competitive protein tyrosine kinase (PTK) inhibitors. All current approved therapeutics targeting inhibition of PTKs involved in disease are ATP-competitive inhibitors. However, we believe that substrate-competitive inhibition of PTKs offers several important benefits over ATP-competitive inhibition. Due to very high similiarity in the ATP binding pocket across PTKs, obtaining selective inhibition is particularly challenging. Selective inhibition of a target kinase will minimize off-target side-effects of therapeutics as well as provide selective chemical probes for biological studies. Substrate-competitive inhibitors represent an advance toward selective kinase inhibition owing to the non-homologous substrate pocket of PTKs. We plan to develop our methodology using four initial targets: c-Abl, c-Src, and two essential tyrosine kinases in Trypanosomes. c-Abl and c-Src are both involved in cancer progression (validated targets for chronic myelogenous leukemia (CML) and colon cancer, respectively) and the Trypanosome PTKs are potential therapeutic targets for African sleeping sickness (human African trypanosomiasis, HAT). CML is a rare, inoperable cancer which results in more than 5,000 new cases per year in the United States. Colon cancer is the third most common cancer, resulting in over 650,000 deaths per year. African sleeping sickness is a growing problem in western Africa, resulting in 300,000 new cases per year and over 60,000 deaths per year. We believe the proposed research is well-suited for the EUREKA program because: 1) it develops cutting- edge methodologies which challenge the widespread paradigm of kinase inhibition via ATP-competitive compounds, and 2) creates a flexible and robust platform for obtaining substrate-competitive kinase inhibitors against any kinase target involved in disease progression.

Public Health Relevance

Directly or indirectly, over 400 diseases have been linked to protein kinases.
We aim to develop chemical tools to identify substrate-competitive kinase inhibitors. Our methodology will initially focus on two kinases involved in cancer (c-Abl and c-Src) and two kinases involved in African sleeping sickness.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM088546-04
Application #
8267727
Study Section
Special Emphasis Panel (ZGM1-CBB-7 (EU))
Program Officer
Fabian, Miles
Project Start
2009-08-15
Project End
2013-05-31
Budget Start
2012-06-01
Budget End
2013-05-31
Support Year
4
Fiscal Year
2012
Total Cost
$391,199
Indirect Cost
$131,936
Name
University of Michigan Ann Arbor
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
073133571
City
Ann Arbor
State
MI
Country
United States
Zip Code
48109
Breen, Meghan E; Steffey, Michael E; Lachacz, Eric J et al. (2014) Substrate activity screening with kinases: discovery of small-molecule substrate-competitive c-Src inhibitors. Angew Chem Int Ed Engl 53:7010-3
Ko, Kristin S; Steffey, Michael E; Brandvold, Kristoffer R et al. (2013) Development of a chimeric c-Src kinase and HDAC inhibitor. ACS Med Chem Lett 4:779-783
Rabuck, Jessica N; Hyung, Suk-Joon; Ko, Kristin S et al. (2013) Activation state-selective kinase inhibitor assay based on ion mobility-mass spectrometry. Anal Chem 85:6995-7002