This proposal represents a renewal of a current ITGH D43 collaborative training partnership between researchers at the University of Georgia, the Instituto Oswaldo Cruz-FIOCRUZ in Rio de Janeiro, the Universidade Federal de Minas Gerais and the Centro de Pesquisas Rene Rachou (CPqRR) - FIOCRUZ in Belo Horizonte, Brazil. The CPqRR currently has 14 laboratories and 5 funded NIH research awards. The goal of this training proposal is to establish a sustainable core infrastructure at the CPqRR in the areas of bioinformatics, epidemiology and molecular evolution that will complement existing NIH-funded research and facilitate research conducted in other laboratories. The focus of research at the CPqRR Is tropical parasites, their vectors and their hosts. These organisms include: Plasmodium sp., Trypanosoma cruzi. Toxoplasma gondii, Schistosoma mansoni. Anopheles, Blomphalaria and Humans. This proposal is designed to meet the needs ofthe CPqRR by continuing a very productive training program that involves pre-and post-doctoral students from many of the 14 laboratories at the CPqRR for an additional 5 years. Advanced training will be conducted via workshops, courses, short- and long-term training both within Brazil and abroad. Training will involve collaborative research projects originating from the needs of the CPqRR and focusing on several aspects of schistosomiasis. The unifying project for this training will be the continued maintenance and extension (to include population diversity and other """"""""omics"""""""" data) of a Schistosoma genome database created and housed the CPqRR during the first phase of the training award. Molecular evolution training will focus on the Schistosome vector, Blomphalaria and epidemiological/biostatistlcal data will be derived and analyzed from existing funded projects. The technology and knowledge acquired from this training and implementation exercise will be directly applicable to research on other parasitic organisms. We will proactively seek out well qualified candidates for training that have a strong desire to return and contribute their newly acquired expertise to the continuation of a newly founded Center of Bioinformatics.

Public Health Relevance

The need for new drug and vaccine targets for parasitic diseases is tremendous. Advances in technology have provided us with new data that cover many aspects of the biology of the parasites. But, the new data are complex and require sophisticated computational analyses and databases. This proposal is designed to train a new generation of researchers in endemic areas to use this new data to help cure disease.

Agency
National Institute of Health (NIH)
Institute
Fogarty International Center (FIC)
Type
International Research Training Grants (D43)
Project #
5D43TW007012-07
Application #
7939915
Study Section
Special Emphasis Panel (ZRG1-ICP2-B (50))
Program Officer
Katz, Flora N
Project Start
2004-06-01
Project End
2014-06-30
Budget Start
2010-07-01
Budget End
2011-06-30
Support Year
7
Fiscal Year
2010
Total Cost
$150,000
Indirect Cost
Name
University of Georgia
Department
Genetics
Type
Schools of Arts and Sciences
DUNS #
004315578
City
Athens
State
GA
Country
United States
Zip Code
30602
Baptista, Rodrigo P; Reis-Cunha, Joao Luis; DeBarry, Jeremy D et al. (2018) Assembly of highly repetitive genomes using short reads: the genome of discrete typing unit III Trypanosoma cruzi strain 231. Microb Genom :
Rosse, Izinara C; Assis, Juliana G; Oliveira, Francislon S et al. (2017) Whole genome sequencing of Guzerá cattle reveals genetic variants in candidate genes for production, disease resistance, and heat tolerance. Mamm Genome 28:66-80
Zukurov, Jean P; do Nascimento-Brito, Sieberth; Volpini, Angela C et al. (2016) Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage. Algorithms Mol Biol 11:2
Valdivia, Hugo O; Scholte, Larissa L S; Oliveira, Guilherme et al. (2015) The Leishmania metaphylome: a comprehensive survey of Leishmania protein phylogenetic relationships. BMC Genomics 16:887
Andrade, Luiza Freire de; Mourão, Marina de Moraes; Geraldo, Juliana Assis et al. (2014) Regulation of Schistosoma mansoni development and reproduction by the mitogen-activated protein kinase signaling pathway. PLoS Negl Trop Dis 8:e2949
Zerlotini, Adhemar; Aguiar, Eric R G R; Yu, Fudong et al. (2013) SchistoDB: an updated genome resource for the three key schistosomes of humans. Nucleic Acids Res 41:D728-31
Bonin, Camila P; Baccarin, Raquel Y A; Nostell, Katarina et al. (2013) Lipopolysaccharide-induced inhibition of transcription of tlr4 in vitro is reversed by dexamethasone and correlates with presence of conserved NF?B binding sites. Biochem Biophys Res Commun 432:256-61
dos Santos, Paula F; Ruiz, Jeronimo C; Soares, Rodrigo P P et al. (2012) Molecular characterization of the hexose transporter gene in benznidazole resistant and susceptible populations of Trypanosoma cruzi. Parasit Vectors 5:161
Pierce, Raymond J; Dubois-Abdesselem, Florence; Lancelot, Julien et al. (2012) Targeting schistosome histone modifying enzymes for drug development. Curr Pharm Des 18:3567-78
Young, Neil D; Jex, Aaron R; Li, Bo et al. (2012) Whole-genome sequence of Schistosoma haematobium. Nat Genet 44:221-5

Showing the most recent 10 out of 41 publications