Muse, S V (1996) Estimating synonymous and nonsynonymous substitution rates. Mol Biol Evol 13:105-14
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Clark, A G; Leicht, B G; Muse, S V (1996) Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila. Mol Biol Evol 13:471-82
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Muse, S V (1995) Evolutionary analyses of DNA sequences subject to constraints of secondary structure. Genetics 139:1429-39
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Leicht, B G; Muse, S V; Hanczyc, M et al. (1995) Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila. Genetics 139:299-308
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Kirby, D A; Muse, S V; Stephan, W (1995) Maintenance of pre-mRNA secondary structure by epistatic selection. Proc Natl Acad Sci U S A 92:9047-51
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Muse, S V; Gaut, B S (1994) A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 11:715-24
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