The chemical shift of an atom is a direct result of the atom's environment. This valuable source of data goes unused in most NMR structure refinement methods, however. The goal of this research is to develop theories that relate chemical shifts to three dimensional conformation, so that macromolecular structures of improved quality can be more speedily attained. The approach is as follows: A pool of experimental chemical shifts will be gathered for small compounds and macromolecules for which detailed structural information is known. Additional shifts will be generated for small molecules or complexes of interest, using recently developed quantum chemistry techniques. Empirical equations approximating the physical effects of environment on chemical shifts will be developed and parameterized to match the collected data. Once satisfactory equations are obtained, they will be integrated into a structure refinement program. In addition to accelerating and improving NMR refinement methods, this work will pinpoint areas in biomolecules where solution and crystal structures differ, by way of discrepancies between observed and calculated shifts. Ultimately, this knowledge may aid in the understanding of structurally-related mechanisms of biomolecular function.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
5F32GM018427-02
Application #
2459282
Study Section
Special Emphasis Panel (ZRG3-BBCA (01))
Project Start
1998-01-30
Project End
Budget Start
1997-08-01
Budget End
1997-10-31
Support Year
2
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
City
La Jolla
State
CA
Country
United States
Zip Code
92037