Nano-indentation by atomic force microscopy (AFM) has the sensitivity and resolution to provide needed data on regional mechanical properties of living cells. However, interpretation of the results is complicated by the pyramidal shape of the AFM probe tip, and its small size relative to the depth of indentation. To help realize the full potential of this technology, the overall goal of this proposal is to perform a thorough engineering analysis of the finite-indentation problem, emphasizing the effects of relative indentation depth and tip geometry, and use the findings to guide AFM indentation studies on the mechanical properties of living cells. A systematic series of finite element simulations will be used to specify the conditions for which popular simplistic methods for AFM analysis are valid, and to address two other specific aims testing whether indentations can be used to identify material heterogeneity, non- linearity, and anisotropy. A fourth specific aim utilizes simultaneous static stretch and AFM identification of cells to test the hypothesis that resting cardiac fibroblasts have non-linear and isotropic material properties, but they become anisotropic after reorientation of actin stress fibers in response to cyclic stretch.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
1F32GM019756-01
Application #
2727292
Study Section
Special Emphasis Panel (ZRG3-BBCA (03))
Project Start
1998-09-11
Project End
Budget Start
1998-03-12
Budget End
1999-03-11
Support Year
1
Fiscal Year
1998
Total Cost
Indirect Cost
Name
Barnes-Jewish Hospital
Department
Type
DUNS #
City
Saint Louis
State
MO
Country
United States
Zip Code
63110
Carr, Jennifer F; Danziger, Michael E; Huang, Athena L et al. (2015) Engineering the genome of Thermus thermophilus using a counterselectable marker. J Bacteriol 197:1135-44
Demirci, Hasan; Murphy 4th, Frank V; Murphy, Eileen L et al. (2014) Structural analysis of base substitutions in Thermus thermophilus 16S rRNA conferring streptomycin resistance. Antimicrob Agents Chemother 58:4308-17
Demirci, Hasan; Murphy 4th, Frank; Murphy, Eileen et al. (2013) A structural basis for streptomycin-induced misreading of the genetic code. Nat Commun 4:1355
Demirci, Hasan; Wang, Leyi; Murphy 4th, Frank V et al. (2013) The central role of protein S12 in organizing the structure of the decoding site of the ribosome. RNA 19:1791-801
Demirci, Hasan; Sierra, Raymond G; Laksmono, Hartawan et al. (2013) Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser. Acta Crystallogr Sect F Struct Biol Cryst Commun 69:1066-9
Cantara, William A; Murphy 4th, Frank V; Demirci, Hasan et al. (2013) Expanded use of sense codons is regulated by modified cytidines in tRNA. Proc Natl Acad Sci U S A 110:10964-9
Monshupanee, Tanakarn; Johansen, Shanna K; Dahlberg, Albert E et al. (2012) Capreomycin susceptibility is increased by TlyA-directed 2'-O-methylation on both ribosomal subunits. Mol Microbiol 85:1194-203
Demirci, Hasan; Murphy 4th, Frank; Belardinelli, Riccardo et al. (2010) Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function. RNA 16:2319-24
Demirci, Hasan; Larsen, Line H G; Hansen, Trine et al. (2010) Multi-site-specific 16S rRNA methyltransferase RsmF from Thermus thermophilus. RNA 16:1584-96
Demirci, Hasan; Belardinelli, Riccardo; Seri, Emilia et al. (2009) Structural rearrangements in the active site of the Thermus thermophilus 16S rRNA methyltransferase KsgA in a binary complex with 5'-methylthioadenosine. J Mol Biol 388:271-82

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