Membrane protein structure determination is a difficult task for structural biologists. Membrane proteins comprise 30% of the proteome. However, only ~30 unique structures have been determined, making their contribution to the protein data bank less than 0.5%. The majority of membrane proteins are transmembrane helical bundles, but of the known structures roughly half are beta-barrel proteins, which are limited to the outer membrane of bacteria, mitochondria, and chloroplasts. This study targets helical membrane proteins with two, three, and four predicted transmembrane segments for NMR structure determination in order to significantly diversify the different types of membrane protein structures known. Defective membrane proteins have been identified in many diseases due to misfolding and loss of function making them targets for drug design. Structural information could advance the effectiveness of these drug pursuits. In addition, more helical transmembrane structures will aid in the understanding of membrane protein stability and increase the likelihood of predicting membrane protein structures.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
5F32GM068286-03
Application #
6897255
Study Section
Special Emphasis Panel (ZRG1-F04 (20))
Program Officer
Flicker, Paula F
Project Start
2003-06-16
Project End
2006-06-15
Budget Start
2005-06-16
Budget End
2006-06-15
Support Year
3
Fiscal Year
2005
Total Cost
$49,928
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Beuck, Christine; Szymczyna, Blair R; Kerkow, Donald E et al. (2010) Structure of the GLD-1 homodimerization domain: insights into STAR protein-mediated translational regulation. Structure 18:377-89
Columbus, Linda; Lipfert, Jan; Jambunathan, Kalyani et al. (2009) Mixing and matching detergents for membrane protein NMR structure determination. J Am Chem Soc 131:7320-6
McCleverty, Clare J; Columbus, Linda; Kreusch, Andreas et al. (2008) Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634. Protein Sci 17:869-77
Lipfert, Jan; Columbus, Linda; Chu, Vincent B et al. (2007) Size and shape of detergent micelles determined by small-angle X-ray scattering. J Phys Chem B 111:12427-38
Columbus, Linda; Lipfert, Jan; Klock, Heath et al. (2006) Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination. Protein Sci 15:961-75
Columbus, Linda; Peti, Wolfgang; Etezady-Esfarjani, Touraj et al. (2005) NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima. Proteins 60:552-7