T7 gene 2.5 ssDNA-binding protein (gp2.5) plays a key role in T7 DNA replication, recombination, and repair. It interacts with T7 DNA polymerase and T7 helicaselprimase, and is essential for coordination of leading and lagging strand synthesis. Gp2.5 stimulates the primase activity of gp4 and the polymerase activity of T7 potymerase.Biochemical and genetic studies have identified the acidic C-termi-nus of gp2.5 as a region involved in interactions with T7 DNA polymerase, T7 DNA helicase/primase and itself to form a dimer. In addition the C-terminus modulates the ssDNA-binding activity of the gp2.5 protein. The goal of this proposal is to understand the role of the C-terminus of gp2.5 in the coordination of protein and ssDNA interactions within the T7 replisome. Using crosslinking, proteolysis, and mass spectrometry we plan to identify the contact points between gp2.5 and gp4 (T7 helicasetprimase), gp2.5 and gp5 (T7 polymerase), and the packing of the gp2.5 C-terminus with respect to the rest of the molecule. Site-directed mutagenesis, affinity chromatography, fluorescence spectroscopy, and surface plasmon resonance will be used to study these interactions in detail. The proposed studies will contribute to our understanding of the mechanisms of coordination of the various enzymatic activities at the replication fork and provide a starting point for understanding the process in more complex systems.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
5F32GM072305-02
Application #
6921392
Study Section
Special Emphasis Panel (ZRG1-F04B (20))
Program Officer
Dearolf, Charles R
Project Start
2004-07-01
Project End
2006-06-30
Budget Start
2005-07-01
Budget End
2006-06-30
Support Year
2
Fiscal Year
2005
Total Cost
$48,296
Indirect Cost
Name
Harvard University
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
047006379
City
Boston
State
MA
Country
United States
Zip Code
02115
Marintcheva, Boriana; Qimron, Udi; Yu, Yao et al. (2009) Mutations in the gene 5 DNA polymerase of bacteriophage T7 suppress the dominant lethal phenotype of gene 2.5 ssDNA binding protein lacking the C-terminal phenylalanine. Mol Microbiol 72:869-80
Shokri, Leila; Marintcheva, Boriana; Eldib, Mootaz et al. (2008) Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA. Nucleic Acids Res 36:5668-77
Marintcheva, Boriana; Marintchev, Assen; Wagner, Gerhard et al. (2008) Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface. Proc Natl Acad Sci U S A 105:1855-60
Qimron, Udi; Marintcheva, Boriana; Tabor, Stanley et al. (2006) Genomewide screens for Escherichia coli genes affecting growth of T7 bacteriophage. Proc Natl Acad Sci U S A 103:19039-44
Marintcheva, Boriana; Hamdan, Samir M; Lee, Seung-Joo et al. (2006) Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein. J Biol Chem 281:25831-40
Shokri, Leila; Marintcheva, Boriana; Richardson, Charles C et al. (2006) Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA. J Biol Chem 281:38689-96
Hamdan, Samir M; Marintcheva, Boriana; Cook, Timothy et al. (2005) A unique loop in T7 DNA polymerase mediates the binding of helicase-primase, DNA binding protein, and processivity factor. Proc Natl Acad Sci U S A 102:5096-101