The objective of this project is to develop novel, open-source, DICOM compliant, cross-platform software tools for reconstructing, quantifying and visualizing hyperpolarized MR data as driven by the HMTRC Collaborative Projects and to maintain, disseminate, and refine the SIVIC package to meet the broad needs of this rapidly expanding field. The unique challenges associated with the acquisition and interpretation of such data has meant that new strategies are required for reconstruction, quantitative analysis and integration with other imaging modalities. There are currently no commercial packages available to meet these needs. The dissemination of new methodologies and applications being investigated by TR&D1 and TR&D2 is critically dependent upon having a rapid feedback between theoretical concept, experiment and interpretation of results. The progress that TR&D3 has made in the last three years in satisfying these requirements has been a major factor in meeting the needs of the Research, Collaborative and Service Projects. The SIVIC package and new, custom designed capabilities have been disseminated through one-on-one interactions, in highly successful, hands-on sessions at the HMTRC workshops and using the comprehensive on-line portal. In translating the hyperpolarized C-13 technology from in vitro to pre-clinical and human studies, we have identified several areas where new approaches would have a major impact for our users. In the next funding cycle we propose to accelerate the pace of discovery and translation in three main areas:
Aim 1 : To expand and enhance the capabilities of the SIVIC software package to support development, analysis and validation of the new data acquisition strategies being developed in TR&D1 and TR&D2.
Aim 2 : To develop new algorithms and pipelines for analyzing hyperpolarized MR data for applications that are being driven by investigators in the Collaborative and Service Projects.
Aim 3 : To disseminate, support and provide ongoing refinements for software tools, analysis methods and novel algorithms being developed in SIVIC for interpretation of hyperpolarized MR data for the Research, Collaborative and Service Projects, as well as the broader research community.

Public Health Relevance

The purpose of this TR&D project is to develop and distribute novel software tools for acquiring, reconstructing, and post-processing hyperpolarized C-13 MR metabolic imaging and spectral data. Driven by the needs of our Collaborative Projects, we will implement new capabilities that are based upon the SIVIC platform, are accessible to non-experts, and will allow rapid dissemination of this exciting technology to the Service Projects and the broader research community.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Biotechnology Resource Grants (P41)
Project #
5P41EB013598-07
Application #
9324239
Study Section
Special Emphasis Panel (ZEB1-OSR-B)
Project Start
2011-08-01
Project End
Budget Start
2017-05-01
Budget End
2018-04-30
Support Year
7
Fiscal Year
2017
Total Cost
$277,479
Indirect Cost
$102,413
Name
University of California San Francisco
Department
Type
Domestic Higher Education
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94118
Mutch, Christopher A; Ordonez, Alvaro A; Qin, Hecong et al. (2018) [11C]Para-Aminobenzoic Acid: A Positron Emission Tomography Tracer Targeting Bacteria-Specific Metabolism. ACS Infect Dis 4:1067-1072
Jiang, Wenwen; Larson, Peder E Z; Lustig, Michael (2018) Simultaneous auto-calibration and gradient delays estimation (SAGE) in non-Cartesian parallel MRI using low-rank constraints. Magn Reson Med 80:2006-2016
von Morze, Cornelius; Ohliger, Michael A; Marco-Rius, Irene et al. (2018) Direct assessment of renal mitochondrial redox state using hyperpolarized 13 C-acetoacetate. Magn Reson Med 79:1862-1869
Park, Ilwoo; Larson, Peder E Z; Gordon, Jeremy W et al. (2018) Development of methods and feasibility of using hyperpolarized carbon-13 imaging data for evaluating brain metabolism in patient studies. Magn Reson Med 80:864-873
Autry, Adam W; Hashizume, Rintaro; James, C David et al. (2018) Measuring Tumor Metabolism in Pediatric Diffuse Intrinsic Pontine Glioma Using Hyperpolarized Carbon-13 MR Metabolic Imaging. Contrast Media Mol Imaging 2018:3215658
Axler, Sheldon; Shin, Peter J (2018) THE NEUMANN PROBLEM ON ELLIPSOIDS. J Appl Math Comput 57:261-278
von Morze, Cornelius; Merritt, Matthew E (2018) Cancer in the crosshairs: targeting cancer metabolism with hyperpolarized carbon-13 MRI technology. NMR Biomed :e3937
Truillet, Charles; Parker, Matthew F L; Huynh, Loc T et al. (2018) Measuring glucocorticoid receptor expression in vivo with PET. Oncotarget 9:20399-20408
Li, Nan; Liu, Shengping; Hu, Xiaoqing et al. (2018) Electromagnetic Field and Radio Frequency Circuit Co-Simulation for Magnetic Resonance Imaging Dual-Tuned Radio Frequency Coils. IEEE Trans Magn 54:
Sriram, Renuka; Sun, Jinny; Villanueva-Meyer, Javier et al. (2018) Detection of Bacteria-Specific Metabolism Using Hyperpolarized [2-13C]Pyruvate. ACS Infect Dis 4:797-805

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