Alternative .splicing allows hutTians to protiuce a vast proteome diversity from a relatively few (~24,000) protein coding genes. This ROO proposal is part: of an overall objective to gain insight into the fole of alternative splicing in retinal development. 1 have chosen to address this question by focusing on SfrslO, with the specific hypothesis that it is essential for cell fate determination and differentiation. The overall goal is to determine the expression, function and targets of SfrslO during retinal development. I have employed in situ hybridization, immunofluorescence and microarray analysis to determine the expression of SfrslO during retinal development. In all, SfrslO appears to be expressed in progenitor cells and differentiating amacrine cells. Interestingly, the microarray data obtained from single retinal cells shows that certain progenitor cell markers such as cycling Dl and Sfrsp2 are enriched along with the expression of SfrslO. To determine the function of SfrslO,! have employed in vivo electroporation to deliver F^NAi or the misexpression construct in PO retinal progenitor cells. 1 have found that loss of SfrslO function results in increase in the numberof Mullerglia at the expense of neurons. This experiment utilizes a Hamilton needle to deliver the plasmid into the subretinal space. However, this method has often created damage to the retina. 1 have now employed a different method which utilized glass needles that leave a negligible imprint on the retina. While RNAi constructs reported in the grant have been used to determine the function of SfrslO, a conditional knockout mouse is crucial to this proposal. The production of such a mouse has been initiated at the University of Connecticut, where I will begin my position as an assistant professor on August I'S 2010. As 1 continue this project in my laboratory at the University of Connecticut, I will further refine the expression of SfrslO, perform gain and loss of SfrslO function with the electroporation techinque. Finally, the conditional knockout mouse will be crossed to retina specific Cre lines followed by detailed analysis of the phenotype. Also, the knockout mouse retinal cells will be used for deep (454) sequecing to identify the targets of SfrslO. Extenstion of this work in my laboratory will provide me with preliminary data that 1 intend to use for an ROl grant that should launch my independent career in science.

Public Health Relevance

Understanding the role of alternative splicing in development is essential to our understanding the underlying nnechanism that leads to diseases. There are several diseases such as retinitis pigmentosa, myotonic dystrophy, and spinal muscular atrophy that are linked to defects in alternative splicing of specific genes or are caused by mutations in genes that regualte the process of alternative splicing.

National Institute of Health (NIH)
National Eye Institute (NEI)
Research Transition Award (R00)
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Special Emphasis Panel (NSS)
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Greenwell, Thomas
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University of Connecticut
Schools of Arts and Sciences
United States
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Karunakaran, Devi Krishna Priya; Al Seesi, Sahar; Banday, Abdul Rouf et al. (2016) Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development. BMC Genomics 17 Suppl 5:495
Karunakaran, Devi Krishna Priya; Chhaya, Nisarg; Lemoine, Christopher et al. (2015) Loss of citron kinase affects a subset of progenitor cells that alters late but not early neurogenesis in the developing rat retina. Invest Ophthalmol Vis Sci 56:787-98
Baumgartner, Marybeth; Lemoine, Christopher; Al Seesi, Sahar et al. (2015) Minor splicing snRNAs are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons. Dev Neurobiol 75:895-907
Banday, Abdul Rouf; Baumgartner, Marybeth; Al Seesi, Sahar et al. (2014) Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons. Cell Cycle 13:2526-41
Karunakaran, Devi Krishna Priya; Congdon, Sean; Guerrette, Thomas et al. (2013) The expression analysis of Sfrs10 and Celf4 during mouse retinal development. Gene Expr Patterns 13:425-36