Astrocytes are a major type of glia that play critical roles in the development and function of the nervous system. Malfunction of astrocytes are involved in neurological disorders including glioma, autism, amyotrophic lateral sclerosis, traumatic brain injury and stroke. How astrocyte proliferation and differentiation are regulated remains poorly understood. Increased astrocyte proliferation in humans contributes to the expansion in brain size in human evolution, and is potentially important for human intelligence. Unchecked proliferation of astrocytes, however, can lead to glioma. The mechanistic differences in the regulation of astrocyte proliferation and differentiation in humans and mice are unknown. Transcription factors specifically expressed by a cell type are key regulators of cell differentiation. Although transcriptional regulations of astrocytes have been studied in the spinal cord and the retina, the transcription factor(s) that regulate astrocyte proliferation and differentiation in the brain remains elusive. In my preliminary studies, I used innovative methods to purify all of the major cell types from mouse brains and obtained sensitive and accurate transcriptome datasets of each of the cell types by RNA-sequencing. I identified three astrocyte-specific transcription factors with this unbiased approach. Mice deficient for one of these factors have substantially reduced expression of astrocyte genes. In addition, I developed the first method to acutely purify astrocytes and their progenitors from human brains and I optimized a culturing condition that prevents these astrocytes from becoming reactive, which is a major limitation of existing methods. Building on these results, I propose to test the hypothesis that th three astrocyte-specific transcription factors are necessary and sufficient for astrocytes differentiation and that the differential regulation of these factors underlies the increase of astrocytes in human brains compared with mouse brains. In the K99 phase, I will test the necessity and sufficiency of these transcription factors in astrocyte proliferation and differentiation using existing knockout mouse lines, and a combination of in vitro and in vivo molecular manipulation techniques including viral infection and in utero electroporation. I will acquire expertise in molecular manipulations from the mentoring labs. I will also examine the regulatory interactions between these three transcription factors and determine whether a transcriptional cascade formed by the three factors sequentially regulate astrocyte specification, proliferation, and maturation. Finally, as an independent investigator, I will utilize K99 phase training in molecular manipulations and examine the role of the three transcription factors in human astrocyte development with the new purification and culturing method I developed. I will also investigate the mechanisms underlying the increase of astrocytes in humans. The proposed research is expected to close a major knowledge gap in brain development, as astrocytes are the last major cell type of the brain without knowledge of the transcriptional regulation of their differentiation. Moreover, knowledge obtained from this project has the potential to advance the treatment of glioma.

Public Health Relevance

Glioma is an aggressive and often fatal malignancy of the brain with no effective treatment strategies. The proposed studies will lead to a better understanding of the underlying biological mechanisms of glioma and the differences between human and mouse astrocyte differentiation. Such knowledge has the potential to bridge animal studies with the development of successful treatment of glioma for human patients.

National Institute of Health (NIH)
National Institute of Neurological Disorders and Stroke (NINDS)
Research Transition Award (R00)
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Special Emphasis Panel (NSS)
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Morris, Jill A
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University of California Los Angeles
Schools of Medicine
Los Angeles
United States
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Watanabe, Momoko; Buth, Jessie E; Vishlaghi, Neda et al. (2017) Self-Organized Cerebral Organoids with Human-Specific Features Predict Effective Drugs to Combat Zika Virus Infection. Cell Rep 21:517-532
Darmanis, Spyros; Sloan, Steven A; Croote, Derek et al. (2017) Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma. Cell Rep 21:1399-1410
Zhang, Ye; Sloan, Steven A; Clarke, Laura E et al. (2016) Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse. Neuron 89:37-53
Larson, Valerie A; Zhang, Ye; Bergles, Dwight E (2016) Electrophysiological properties of NG2(+) cells: Matching physiological studies with gene expression profiles. Brain Res 1638:138-160
Dong, Xiaomin; Chen, Kenian; Cuevas-Diaz Duran, Raquel et al. (2015) Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination. PLoS Genet 11:e1005669
Yan, Qinghong; Weyn-Vanhentenryck, Sebastien M; Wu, Jie et al. (2015) Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators. Proc Natl Acad Sci U S A 112:3445-50
Darmanis, Spyros; Sloan, Steven A; Zhang, Ye et al. (2015) A survey of human brain transcriptome diversity at the single cell level. Proc Natl Acad Sci U S A 112:7285-90
Zhang, Ye; Chen, Kenian; Sloan, Steven A et al. (2014) An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex. J Neurosci 34:11929-47