During the processes of thymic lymphocyte maturation the thymus receives progenitors from hematopoietic tissues, regulates their rearrangement of different classes of T cell receptor genes, positively selects those whose receptors interact with self-MHC, ignores those who receptors do not, and actively deletes those that are potentially autoimmune. The stromal cells of the thymus that regulate this process are derived from all 3 tissue layers - endoderm, ectoderm, and mesoderm. During fetal life the thymus produces a class of fetal T cells that are exported to skin and reproductive epithelium, where they self-renew for life. Thereafter all T cells are produced throughout the life of the animal to protect against intracellular infections and newly developing cancers. In this grant several stages of thymic lymphocyte development are studied. Taking advantage of our recent isolation of several hematopoietic cells capable of giving rise to thymic lymphocytes (bone marrow long-term hematopoietic stem cells [LT-HSC]), ST-HSC, and non-self-renewing multipotent progenitors (MPP); the common lymphocyte progenitor (CLP), and the bone marrow common T cell progenitor (CTP), the identification of which of these progenitors emigrates to the thymus to initiate T cell development will be determined. Within the thymus, at least 2 pathways and up to 10 cells placed in lineages of these 2 pathways have been isolated and purified to homogeneity. In addition, the major subclasses of stromal cells have been identified, are capable of isolation, and are known to be useful in in vitro models of thymic lymphocyte differentiation. A major goal of this grant is to identify particular interactions between single stage developing T cells and single type stromal cells, including stroma that are involved in the processes of thymic maturation. These processes include 1) induction of rearrangement of the TCRgammadelta genes; 2) the TCRalphabeta genes; 3) finding the stroma responsible for positive selection of self MHC reactive T cells; 4) the stroma that house ignored cells that are destined to die by default; and 5) the stromal elements that actively delete or inactivate the small subset of self reactive T cells that would be autoimmune. Two model systems for the development of T lymphocytes predominate in the literature - normal lymphocytes responding to self superantigens (SAg), and developing T cells expressing transgenic TCRs against particular MHC, peptide antigens. The 2 models give markedly different answers as to the stages at which positive and negative selection occur. A major part of this grant is to develop a more physiological, in situ knockin of a particular TCR into the TCR Vbeta region, so that the stages of thymic lymphocyte maturation can be determined without the artifacts of superantigens and enforced expression of high levels of TCR. Finally, because adult thymuses cannot support the production of the fetal T cells that emigrate to skin and reproductive epithelium, and because adult HSC cannot respond to fetal thymic stroma by making fetal outcomes, several experiments will be carried out to identify and isolate the fetal stroma that are responsible for fetal T cell development and, if possible, the fetal stem cell or lymphocyte progenitor receptors that enable them to recognize and respond to the fetal stroma.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI047457-04
Application #
6652071
Study Section
Special Emphasis Panel (ZRG1-EI (02))
Program Officer
Macchiarini, Francesca
Project Start
2000-08-01
Project End
2005-05-31
Budget Start
2003-06-01
Budget End
2004-05-31
Support Year
4
Fiscal Year
2003
Total Cost
$323,741
Indirect Cost
Name
Stanford University
Department
Pathology
Type
Schools of Medicine
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Dimov, Ivan K; Lu, Rong; Lee, Eric P et al. (2014) Discriminating cellular heterogeneity using microwell-based RNA cytometry. Nat Commun 5:3451
Seita, Jun; Sahoo, Debashis; Rossi, Derrick J et al. (2012) Gene Expression Commons: an open platform for absolute gene expression profiling. PLoS One 7:e40321
Fathman, John W; Bhattacharya, Deepta; Inlay, Matthew A et al. (2011) Identification of the earliest natural killer cell-committed progenitor in murine bone marrow. Blood 118:5439-47
Sahoo, Debashis; Seita, Jun; Bhattacharya, Deepta et al. (2010) MiDReG: a method of mining developmentally regulated genes using Boolean implications. Proc Natl Acad Sci U S A 107:5732-7
Kim, K; Doi, A; Wen, B et al. (2010) Epigenetic memory in induced pluripotent stem cells. Nature 467:285-90
Ji, Hong; Ehrlich, Lauren I R; Seita, Jun et al. (2010) Comprehensive methylome map of lineage commitment from haematopoietic progenitors. Nature 467:338-42
Inlay, Matthew A; Bhattacharya, Deepta; Sahoo, Debashis et al. (2009) Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development. Genes Dev 23:2376-81
Serafini, Marta; Dylla, Scott J; Oki, Masayuki et al. (2007) Hematopoietic reconstitution by multipotent adult progenitor cells: precursors to long-term hematopoietic stem cells. J Exp Med 204:129-39
Serwold, Thomas; Hochedlinger, Konrad; Inlay, Matthew A et al. (2007) Early TCR expression and aberrant T cell development in mice with endogenous prerearranged T cell receptor genes. J Immunol 179:928-38
Luckey, Chance John; Bhattacharya, Deepta; Goldrath, Ananda W et al. (2006) Memory T and memory B cells share a transcriptional program of self-renewal with long-term hematopoietic stem cells. Proc Natl Acad Sci U S A 103:3304-9

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