With more than 170 million people infected worldwide, Hepatitis C Virus (HCV) has emerged as a significant public health burden. Unfortunately, there is no vaccine available to prevent this infection, and the only approved treatment has significant toxic side effects and is only effective in a subset of patients. Notably research efforts to understand HCV infection have been hindered by the lack of robust tissue culture infection systems and small animal models. Recently however, we and others have developed a robust in vitro HCV infection system, which should finally enable investigation of all stages of viral infection. ? ? In light of the immediate need to elucidate the biology of this virus and identify alternative HCV treatment option, the objective of this application is to develop our in vitro HCV infection system for high throughput screening (HTS) of potential antiviral compounds. The cell-based infection assay proposed would provide several advantages over the currently available HTS approaches being used for HCV drug discovery because it recapitulates the entire viral life cycle and does not restrict screening to any specific predetermined viral target(s). Thus, this HTS infection assay would have the potential to not only provide novel leads for drug discovery efforts, but also to identify new compounds with unique mechanisms of action that can be used as investigational tools to study HCV infection. ? ? Accordingly, this study has 3 Specific Aims: ? ? 1) Implement, optimize, and validate a FRET-based NS3 protease HCV infection assay amenable to HTS. ? ? 2) Implement, optimize, and validate secondary screens that can be used to prioritize initial hits based on specificity, efficacy, and toxicity. ? ? 3) Verify the high throughput capacity of the system by performing preliminary, proof-of-principle screens and analyzing hits to target and/or mechanism of action. ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI070827-02
Application #
7276043
Study Section
Special Emphasis Panel (ZRG1-DDR-N (01))
Program Officer
Koshy, Rajen
Project Start
2006-09-01
Project End
2009-08-31
Budget Start
2007-09-01
Budget End
2008-08-31
Support Year
2
Fiscal Year
2007
Total Cost
$272,414
Indirect Cost
Name
University of Illinois at Chicago
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
098987217
City
Chicago
State
IL
Country
United States
Zip Code
60612
Martin, Danyelle N; Uprichard, Susan L (2013) Identification of transferrin receptor 1 as a hepatitis C virus entry factor. Proc Natl Acad Sci U S A 110:10777-82
Yu, Xuemei; Sainz Jr, Bruno; Petukhov, Pavel A et al. (2012) Identification of hepatitis C virus inhibitors targeting different aspects of infection using a cell-based assay. Antimicrob Agents Chemother 56:6109-20
Sainz Jr, Bruno; Barretto, Naina; Martin, Danyelle N et al. (2012) Identification of the Niemann-Pick C1-like 1 cholesterol absorption receptor as a new hepatitis C virus entry factor. Nat Med 18:281-5
Yu, Xuemei; Uprichard, Susan L (2010) Cell-based hepatitis C virus infection fluorescence resonance energy transfer (FRET) assay for antiviral compound screening. Curr Protoc Microbiol Chapter 17:Unit 17.5.
Sabahi, Ali; Marsh, Katherine A; Dahari, Harel et al. (2010) The rate of hepatitis C virus infection initiation in vitro is directly related to particle density. Virology 407:110-9
Tencate, Veronica; Sainz Jr, Bruno; Cotler, Scott J et al. (2010) Potential treatment options and future research to increase hepatitis C virus treatment response rate. Hepat Med 2010:125-145
Uprichard, Susan L (2010) Hepatitis C virus experimental model systems and antiviral drug research. Virol Sin 25:227-45
Sainz Jr, Bruno; Barretto, Naina; Uprichard, Susan L (2009) Hepatitis C virus infection in phenotypically distinct Huh7 cell lines. PLoS One 4:e6561
Sainz Jr, Bruno; TenCate, Veronica; Uprichard, Susan L (2009) Three-dimensional Huh7 cell culture system for the study of Hepatitis C virus infection. Virol J 6:103
Dahari, Harel; Sainz Jr, Bruno; Perelson, Alan S et al. (2009) Modeling subgenomic hepatitis C virus RNA kinetics during treatment with alpha interferon. J Virol 83:6383-90

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