Plasmids as Vectors of Antibiotic Resistance: Evolution of Plasmid Host Range The dramatic spread of antibiotic resistance is a crisis in the treatment of infectious diseases that affect humans. Although plasmid-mediated gene transfer is now recognized as an important means for the spread of drug resistance, very little is known about the range of hosts to which plasmids can transfer, or if this range evolves over time. While some plasmids only transfer and stably replicate in a narrow range of hosts, so-called broad-host-range plasmids can transfer and replicate in distantly related bacteria, thereby shuffling resistance genes across taxonomic barriers. Understanding the features of the broad-host-range plasmids responsible for their ability to function in a wide range of bacterial hosts is therefore of both medical and fundamental interest. The research proposed builds on and extends the findings of previous studies, which showed that various mutations in the plasmid encoded Rep protein (TrfA) required for plasmid replication are sufficient to alter the host range of a broad-host-range (BHR) plasmid. The long-term goal of this project is to gain insight into the evolutionary patterns of host range shifts of drug resistance plasmids. Here we will explore the general mechanisms and dynamics of plasmid host range evolution by integrating data from experimental evolution of BHR and narrow host range (NHR) plasmids with statistical modeling of plasmid evolutionary dynamics. In this multi-disciplinary study, we propose to address the following specific aims: (1) Determine the evolutionary mechanisms of host range shifts by BHR and NHR plasmids;(2) Develop statistical models and simulations of plasmid evolutionary dynamics;(3) Determine the molecular mechanisms of plasmid host range shifts. In the future, this fundamental knowledge will support research into drug therapies based on restricting the horizontal transfer or stable replication of drug resistance or virulence plasmids in human pathogens. Restricting the spread and persistence of unwanted plasmids is a novel and promising avenue in the fight against human pathogens that could very well be part of future strategies to avoid escalation of this health crisis.

Public Health Relevance

This work will provide a roadmap for further mechanistic studies on the role of specific mutations in plasmid host-range and may lead to attractive therapies that target the replication of antibiotic resistance plasmids and limit the spread of antibiotic resistance in human pathogens.

National Institute of Health (NIH)
National Institute of Allergy and Infectious Diseases (NIAID)
Research Project (R01)
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Genetic Variation and Evolution Study Section (GVE)
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Huntley, Clayton C
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University of Idaho
Schools of Arts and Sciences
United States
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Loftie-Eaton, Wesley; Bashford, Kelsie; Quinn, Hannah et al. (2017) Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nat Ecol Evol 1:1354-1363
Stalder, Thibault; Rogers, Linda M; Renfrow, Chris et al. (2017) Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance. Sci Rep 7:4853
Yano, Hirokazu; Wegrzyn, Katarznya; Loftie-Eaton, Wesley et al. (2016) Evolved plasmid-host interactions reduce plasmid interference cost. Mol Microbiol 101:743-56
Li, Xiaobin; Wang, Yafei; Brown, Celeste J et al. (2016) Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes. FEMS Microbiol Ecol 92:
Stalder, Thibault; Top, Eva (2016) Plasmid transfer in biofilms: a perspective on limitations and opportunities. NPJ Biofilms Microbiomes 2:
Loftie-Eaton, Wesley; Yano, Hirokazu; Burleigh, Stephen et al. (2016) Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance. Mol Biol Evol 33:885-97
Smalla, Kornelia; Jechalke, Sven; Top, Eva M (2015) Plasmid Detection, Characterization, and Ecology. Microbiol Spectr 3:PLAS-0038-2014
Loftie-Eaton, Wesley; Suzuki, Haruo; Bashford, Kelsie et al. (2015) Draft Genome Sequence of Pseudomonas sp. nov. H2. Genome Announc 3:
Loftie-Eaton, Wesley; Tucker, Allison; Norton, Ann et al. (2014) Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence. Appl Environ Microbiol 80:5439-46
Hunter, Samuel S; Yano, Hirokazu; Loftie-Eaton, Wesley et al. (2014) Draft Genome Sequence of Pseudomonas moraviensis R28-S. Genome Announc 2:

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