Many important variables in biomedical studies of HIV/AIDS are orderable, and some statistical methods for ordered categorical data can be applied to continuous data, providing robust analysis approaches that make fewer assumptions than standard approaches. In the first cycle of our grant, we developed a new residual for orderable outcomes, we showed that Spearman's partial correlation can be computed using this new residual, and we demonstrated the use of cumulative probability models (CPMs; also known as cumulative link models) with continuous response variables. In this renewal application, we focus on novel and exciting extensions of these methods that could have a large impact on the analysis of HIV/AIDS and other biomedical data. First, the analysis of continuous responses with models typically reserved for ordered categorical data is innovative and permits very flexible modeling ? particularly of data that require some sort of transformation and/or have detection limits (e.g., HIV viral load). We propose to investigate the asymptotic properties of these techniques, extend them to repeated measures data using generalized estimating equations approaches, and develop them for settings with multiple detection limits. Second, our extension of Spearman's rank correlation to remove the effect of, or to condition on, covariates fills an important gap in the statistical literature and will be commonly employed in practice given the ubiquity of Spearman's correlation in biomedical studies. We propose to extend our approach to estimate the rank correlation, both covariate- adjusted and unadjusted, between bivariate survival data and to longitudinal or clustered data. Finally, in this era of big data, there is a need to be able to perform these techniques in a computationally efficient manner. We propose to study divide-and-combine and other techniques for fitting CPMs and covariate-adjusted Spearman's correlations in large datasets. We will package our methods in freely available software and apply our analyses to important studies of HIV/AIDS.
We will create novel statistical methods for data common in biomedical research, including studies of HIV/AIDS. We will develop and extend cumulative probability models and measures of rank correlation to settings with longitudinal data, multiple detection limits, right-censored data, and very large datasets. The proposed methods will be applied to studies of clinical events and biomarkers for persons living with HIV on antiretroviral therapy.
|Liu, Qi; Li, Chun; Wanga, Valentine et al. (2018) Covariate-adjusted Spearman's rank correlation with probability-scale residuals. Biometrics 74:595-605|
|Oh, Eric J; Shepherd, Bryan E; Lumley, Thomas et al. (2018) Considerations for analysis of time-to-event outcomes measured with error: Bias and correction with SIMEX. Stat Med 37:1276-1289|
|Liu, Qi; Shepherd, Bryan E; Li, Chun et al. (2017) Modeling continuous response variables using ordinal regression. Stat Med 36:4316-4335|
|Shepherd, Bryan E; Blevins Peratikos, Meridith; Rebeiro, Peter F et al. (2017) A Pragmatic Approach for Reproducible Research With Sensitive Data. Am J Epidemiol 186:387-392|
|Shepherd, Bryan E; Rebeiro, Peter F; Caribbean, Central and South America network for HIV epidemiology (2017) Brief Report: Assessing and Interpreting the Association Between Continuous Covariates and Outcomes in Observational Studies of HIV Using Splines. J Acquir Immune Defic Syndr 74:e60-e63|
|Shepherd, Bryan E; Liu, Qi (2016) Discussion of 'Regularized Regression for Categorical Data'. Stat Modelling 16:238-248|
|Shepherd, Bryan E; Li, Chun; Liu, Qi (2016) Probability-scale residuals for continuous, discrete, and censored data. Can J Stat 44:463-479|
|Shepherd, Bryan E; Liu, Qi; Mercaldo, Nathaniel et al. (2016) Comparing results from multiple imputation and dynamic marginal structural models for estimating when to start antiretroviral therapy. Stat Med 35:4335-4351|
|Blevins, Meridith; Wehbe, Firas H; Rebeiro, Peter F et al. (2016) Interactive Data Visualization for HIV Cohorts: Leveraging Data Exchange Standards to Share and Reuse Research Tools. PLoS One 11:e0151201|
|Ray, Wayne A; Liu, Qi; Shepherd, Bryan E (2015) Performance of time-dependent propensity scores: a pharmacoepidemiology case study. Pharmacoepidemiol Drug Saf 24:98-106|
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