Total joint arthroplasty (TJA) is the most common and fastest growing surgical procedure in the nation. Despite the high procedure volume, the evidence base for TJA procedures and associated interventions are limited. This is mainly due to lack of high quality data sources and the logistical difficulties associated with manually extracting TJA information from the unstructured text of the Electronic Health Records (EHR). Meanwhile, the rapid adoption of EHR and the advances in health information technology offer the potential to transform unstructured EHR notes into structured, codified format that can then be analyzed and shared with local and national arthroplasty registries and other agencies. We therefore propose to leverage unique data resources and natural language processing (NLP) technologies to build an informatics infrastructure for automated EHR data extraction and analysis. We will (1) develop a high performance, externally validated and user centric NLP- enabled algorithm for extraction of complex TJA-specific data elements from the structured and unstructured text of the EHR, (2) validate the algorithm externally in multiple EHR platforms and hospital settings, and (3) conduct a demonstration project focused on prediction of prosthetic joint infections using data elements collected by the NLP-enabled algorithm. Our overarching goal is to develop valid, open source and portable NLP-enabled data collection and risk prediction tools and disseminate them widely to hospitals participating in regional and national TJA registries. This research is significant as it leverages strong data resources and expertise to tackle the pressing need for high quality data and accurate prediction models in TJA. Automated data collection and processing capabilities will lead to an upsurge in secondary use of EHR to advance scientific knowledge on TJA risk factors, healthcare quality and patient outcomes. Accurate prediction of high risk patients for prosthetic joint infections will guide prevention and treatment decisions resulting in significant health benefits to TJA patients. The research is innovative because TJA-specific bioinformatics technology will shift TJA research from current under-powered, single-center studies to large, multi-center registry-based observational studies and clinical trials. Our deliverables have the potential to exert a sustained downstream effect on future TJA research, practice and policy.

Public Health Relevance

Lack of high quality data is a critical barrier to progress in total joint arthroplasty (TJA) research. We will utilize health information technology to automate extraction of rich TJA information from the electronic health records, and develop a robust risk prediction score for prosthetic joint infections, a devastating and yet preventable complication of TJA. Widespread adoption of these tools will enhance data collection capabilities and enable affordable large scale studies for practice improvements through secondary use of real-world data. Accurate prediction of post- operative infection risk among TJA candidates will guide individualized preventive strategies for modifiable risk factors, thereby reducing the burden of prosthetic joint infections in TJA patients.

Agency
National Institute of Health (NIH)
Institute
National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)
Type
Research Project (R01)
Project #
5R01AR073147-04
Application #
10103780
Study Section
Biomedical Computing and Health Informatics Study Section (BCHI)
Program Officer
Washabaugh, Charles H
Project Start
2018-03-01
Project End
2023-02-28
Budget Start
2021-03-01
Budget End
2022-02-28
Support Year
4
Fiscal Year
2021
Total Cost
Indirect Cost
Name
Mayo Clinic, Rochester
Department
Type
DUNS #
006471700
City
Rochester
State
MN
Country
United States
Zip Code
55905