The long-term guiding objective of the proposed research is increased understanding of the mechanism of action of the enzyme dihydrofolate reductase in terms of its three-dimensional molecular architecture. Dihydrofolate reductase is present in all self-reproducing living cells where it is essential for continuing DNA biosynthesis. This enzyme is the specific target of several clinically important chemotherapeutic agents of the antifolate family, including antineoplastic and antibiotics such as methotrexate, trimethoprim and pyrimethamine. Detailed in-depth understanding of the structure of this enzyme molecule, its conformational dynamics and how it functions in a range of species will aid medicinal chemists in designing more selectively active disease-specific chemotherapeutic compounds. X-ray crystallographic structure determinations will be carried out on a variety of substrate, cofactor and inhibitor complexes of human, chicken and E. coli dihydrofolate reductases.
Specific aims i nclude: 1) improving the resolution and refinement of the structure E. coli DHFR- NADP+ folate ternary complex in space group P3 2 21; 2) collecting x-ray data on and solving the structures of four other complexes of E. coli DHFR that crystallize isomorphously with the above; 3) solving the structures of three other non-isomorphous crystalline complexes of E. coli DHFR; 4) completing refinement and analysis of nine isomorphous crystal structures of chicken DHFR in space group C2.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA017374-21
Application #
2086593
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1978-05-01
Project End
1996-02-29
Budget Start
1995-03-15
Budget End
1996-02-29
Support Year
21
Fiscal Year
1995
Total Cost
Indirect Cost
Name
University of California San Diego
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
077758407
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Sawaya, M R; Kraut, J (1997) Loop and subdomain movements in the mechanism of Escherichia coli dihydrofolate reductase: crystallographic evidence. Biochemistry 36:586-603
Chen, Y Q; Kraut, J; Callender, R (1997) pH-dependent conformational changes in Escherichia coli dihydrofolate reductase revealed by Raman difference spectroscopy. Biophys J 72:936-41
Lee, H; Reyes, V M; Kraut, J (1996) Crystal structures of Escherichia coli dihydrofolate reductase complexed with 5-formyltetrahydrofolate (folinic acid) in two space groups: evidence for enolization of pteridine O4. Biochemistry 35:7012-20
Reyes, V M; Sawaya, M R; Brown, K A et al. (1995) Isomorphous crystal structures of Escherichia coli dihydrofolate reductase complexed with folate, 5-deazafolate, and 5,10-dideazatetrahydrofolate: mechanistic implications. Biochemistry 34:2710-23
Sawaya, M R; Pelletier, H; Kumar, A et al. (1994) Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science 264:1930-5
Pelletier, H; Sawaya, M R; Kumar, A et al. (1994) Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science 264:1891-903
Chen, Y Q; Kraut, J; Blakley, R L et al. (1994) Determination by Raman spectroscopy of the pKa of N5 of dihydrofolate bound to dihydrofolate reductase: mechanistic implications. Biochemistry 33:7021-6
Brown, K A; Howell, E E; Kraut, J (1993) Long-range structural effects in a second-site revertant of a mutant dihydrofolate reductase. Proc Natl Acad Sci U S A 90:11753-6
McTigue, M A; Davies 2nd, J F; Kaufman, B T et al. (1993) Crystal structures of chicken liver dihydrofolate reductase: binary thioNADP+ and ternary thioNADP+.biopterin complexes. Biochemistry 32:6855-62
McTigue, M A; Davies 2nd, J F; Kaufman, B T et al. (1992) Crystal structure of chicken liver dihydrofolate reductase complexed with NADP+ and biopterin. Biochemistry 31:7264-73

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