Tumors of the central nervous system account for approximately 2% of all cancer deaths, and are the second largest cause of cancer death in the pediatric population. Among men 15-54 years old, brain tumors are the third most frequent cause of cancer death, and among women 15-34 years old, they are 4th most frequent. This project is designed to identify new sites of altered DNA copy number on chromosomes by using a newly developed methology called """"""""comparative genomic hybridization"""""""" (CGH). This method allows us to map increases and decreases of DNA copy number onto normal human chromosomes, and has already identified candidate areas previously unrecognized in tumors. Our major emphasis will be to map and validate candidate areas of decreased and increased DNA copy number in gliomas. A major technical emphasis will be fluorescence in situ hybridization (FSH) to identify genetic aberrations both in single primary brain tumor cells and in DNA isolated from brain tumors.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA061147-02
Application #
2101885
Study Section
Pathology A Study Section (PTHA)
Project Start
1994-08-01
Project End
1997-07-31
Budget Start
1995-08-01
Budget End
1996-07-31
Support Year
2
Fiscal Year
1995
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Pathology
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Metzger, A K; Mohapatra, G; Minn, Y A et al. (1999) Multiple genetic aberrations including evidence of chromosome 11q13 rearrangement detected in pituitary adenomas by comparative genomic hybridization. J Neurosurg 90:306-14
Huhn, S L; Mohapatra, G; Bollen, A et al. (1999) Chromosomal abnormalities in glioblastoma multiforme by comparative genomic hybridization: correlation with radiation treatment outcome. Clin Cancer Res 5:1435-43
Patel, A; van Meyel, D J; Mohapatra, G et al. (1998) Gliomas in families: chromosomal analysis by comparative genomic hybridization. Cancer Genet Cytogenet 100:77-83
Mohapatra, G; Bollen, A W; Kim, D H et al. (1998) Genetic analysis of glioblastoma multiforme provides evidence for subgroups within the grade. Genes Chromosomes Cancer 21:195-206
Mohapatra, G; Moore, D H; Kim, D H et al. (1997) Analyses of brain tumor cell lines confirm a simple model of relationships among fluorescence in situ hybridization, DNA index, and comparative genomic hybridization. Genes Chromosomes Cancer 20:311-9
Plantaz, D; Mohapatra, G; Matthay, K K et al. (1997) Gain of chromosome 17 is the most frequent abnormality detected in neuroblastoma by comparative genomic hybridization. Am J Pathol 150:81-9
Weiss, W A; Aldape, K; Mohapatra, G et al. (1997) Targeted expression of MYCN causes neuroblastoma in transgenic mice. EMBO J 16:2985-95
Sauter, G; Maeda, T; Waldman, F M et al. (1996) Patterns of epidermal growth factor receptor amplification in malignant gliomas. Am J Pathol 148:1047-53
Mohapatra, G; Kim, D H; Feuerstein, B G (1995) Detection of multiple gains and losses of genetic material in ten glioma cell lines by comparative genomic hybridization. Genes Chromosomes Cancer 13:86-93
Feuerstein, B G; Mohapatra, G (1995) Molecular cytogenetic quantitation of gains and losses of genetic material from human gliomas. J Neurooncol 24:47-55