The long-term objective of this application is to understand the mechanism by which tumors transcriptionally silence CpG island-containing genes. CpG islands are regions of DNA associated with promoters of approximately 50 percent of human genes. In normal cells, CpG islands are devoid of cytosine methylation and have a unique chromatin structure, which supports expression of associated genes. In tumors and SV-40-transformed cells, CpG island-containing genes can be aberrantly silenced by a mechanism involving methylation and alteration of chromatin structure. While methylation-associated gene silencing plays a role in many processes important in cancer biology, the events that trigger CpG island methylation are not understood. The presence of methylated CpG islands in SV40-infected, T antigen-expressing cells suggests that inactivation of pRb and/or p53 may be a prerequisite for aberrant methylation. Changes in expression/activity of other proteins may also be involved, however, as CpG island methylation does not seem to occur immediately after pRb/p53 inactivation, but rather following growth of pRb and/or p53 deficient cells to near the end of their lifespan. Among the proteins upregulated as cells near the end of their lifespans are the cyclin-dependent kinase inhibitors p16 and p21. p16 and p21 block the phosphorylation of proteins such as pRb, block entry of cells into S-phase, and may block the action of proteins that function in the reassembly of appropriately methylated chromatin that occurs following DNA replication. Cells lacking functional pRb/p53 cannot respond to p16/p21-mediated growth arrest signals and replicate their DNA under conditions in which chromatin restructuring, and the closely linked process of methylation, may be disregulated. The applicant hypothesizes that p53 and/or pRb inactivation, in combination with high levels of p16 or p21, triggers CpG island methylation. This hypothesis will be tested by the following specific aims: 1) To determine if functional inactivation of p53/pRb is alone sufficient to trigger CpG island methylation. 2) To determine if over-expression of p16 and/or p21 are alone sufficient to trigger CpG island methylation. 3) To determine if functional inactivation of p53/pRb in combination with over-expression of p16 and/or p21 predisposes cells to inappropriate methylation of CpG islands. These studies represent a first step in understanding the gene silencing process and will ultimately contribute to the development of therapies addressed at controlling gene expression.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
1R01CA085352-01
Application #
6084938
Study Section
Special Emphasis Panel (ZRG1-ET-2 (03))
Program Officer
Okano, Paul
Project Start
2000-07-01
Project End
2003-06-30
Budget Start
2000-07-01
Budget End
2001-06-30
Support Year
1
Fiscal Year
2000
Total Cost
$232,313
Indirect Cost
Name
University of California San Francisco
Department
Neurosurgery
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143