This revised renewal application requests funding for years 15-19 for a proposal that is devoted to understanding the impact of genetic hypomorphs of the p53 tumor suppressor on cancer risk and therapy. The central premise is that the analysis of cancer-associated genetic hypomorphs of the p53 tumor suppressor can lend critical insight into the key functions of this tumor suppressor in cancer. The proposed research focuses on the African-specific Pro47Ser p53 hypomorph (hereafter S47) that exists in over 800,000 African-descent individuals in the United States and confers increased cancer risk in these individuals. The S47 variant of p53 is defective in the transactivation of a small subset of p53-target genes, particularly those that confer sensitivity to ferroptosis. The overarching hypothesis of the proposed research is that by understanding the biology of P47S and other cancer-associated hypomorphs, two important outcomes are met: the first is the identification of key tumor suppressor functions of p53, which are still not known. The second is that we can use mouse models in order to better understand cancer risk, and uncover superior cancer therapies, for the individuals who possess these variants.
In Aim 1 we will investigate our finding that the tumor micro-environment in S47 mice is more immuno- suppressive, due to increased accumulation of myeloid-derived suppressor cells (MDSCs). MDSCs are potent immunosuppressive cells that directly limit the efficacy of immune checkpoint inhibitors. We will test the efficacy of immune checkpoint inhibitors in WT and S47 mice, and we will test combination therapy in which we target MDSCs.
In Aim 2 we present data that P47S, like two other cancer-associated p53 hypomorphs Y107H and G334R, has impaired ability to transactivate the chromatin modifier PADI4, along with increased propensity to misfold and adopt a mutant p53 conformation. We will investigate the relevance of both activities to tumor suppression by p53.
In Aim 3 we provide PheWAS data indicating that the S47 allele is a highly significant risk factor for bladder cancer in African Americans (p< 6x10-6, OR 7.5). In this aim we investigate the function of S47 in mouse models of bladder cancer, with the goal of better understanding the reasons underlying this significant association. We then follow our published successful protocols to identity novel chemotherapeutic drugs that show improved efficacy in S47 bladder cancer, compared to WT. The combined studies build upon a wealth of published and preliminary data, along with novel mouse models for p53 hypomorphs and the integration of human data throughout. These studies are paramount for our long term goal of understanding the genetic basis of minority cancer disparities, and improving personalized medicine approaches for individuals of African descent.

Public Health Relevance

The proposed research will determine the underlying mechanism(s) for increased cancer risk in individuals with the African-centric p53 hypomorph P47S. This hypomorph exists in over 800,000 African-descent individuals in the United States, and accomplishing these aims has important implications for understanding cancer risk in under-represented populations, and for informing personalized medicine approaches.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
2R01CA102184-15A1
Application #
10141456
Study Section
Tumor Cell Biology Study Section (TCB)
Program Officer
Salnikow, Konstantin
Project Start
2005-06-01
Project End
2025-11-30
Budget Start
2020-12-09
Budget End
2021-11-30
Support Year
15
Fiscal Year
2021
Total Cost
Indirect Cost
Name
Wistar Institute
Department
Type
DUNS #
075524595
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Gnanapradeepan, Keerthana; Basu, Subhasree; Barnoud, Thibaut et al. (2018) The p53 Tumor Suppressor in the Control of Metabolism and Ferroptosis. Front Endocrinol (Lausanne) 9:124
Basu, Subhasree; Gnanapradeepan, Keerthana; Barnoud, Thibaut et al. (2018) Mutant p53 controls tumor metabolism and metastasis by regulating PGC-1?. Genes Dev 32:230-243
Budina-Kolomets, Anna; Barnoud, Thibaut; Murphy, Maureen E (2018) The transcription-independent mitochondrial cell death pathway is defective in non-transformed cells containing the Pro47Ser variant of p53. Cancer Biol Ther 19:1033-1038
Roy, Sunetra; Tomaszowski, Karl-Heinz; Luzwick, Jessica W et al. (2018) p53 orchestrates DNA replication restart homeostasis by suppressing mutagenic RAD52 and POL? pathways. Elife 7:
Barnoud, Thibaut; Budina-Kolomets, Anna; Basu, Subhasree et al. (2018) Tailoring Chemotherapy for the African-Centric S47 Variant of TP53. Cancer Res 78:5694-5705
Gokare, Prashanth; Finnberg, Niklas K; Abbosh, Phillip H et al. (2017) P53 represses pyrimidine catabolic gene dihydropyrimidine dehydrogenase (DPYD) expression in response to thymidylate synthase (TS) targeting. Sci Rep 7:9711
Kung, Che-Pei; Liu, Qin; Murphy, Maureen E (2017) The codon 72 polymorphism of p53 influences cell fate following nutrient deprivation. Cancer Biol Ther 18:484-491
Murphy, Maureen E; Liu, Song; Yao, Song et al. (2017) A functionally significant SNP in TP53 and breast cancer risk in African-American women. NPJ Breast Cancer 3:5
Stockwell, Brent R; Friedmann Angeli, José Pedro; Bayir, Hülya et al. (2017) Ferroptosis: A Regulated Cell Death Nexus Linking Metabolism, Redox Biology, and Disease. Cell 171:273-285
Kung, Che-Pei; Basu, Subhasree; Murphy, Maureen E (2016) A link between TP53 polymorphisms and metabolism. Mol Cell Oncol 3:e1173769

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