RecQ proteins are a conserved, ubiquitous class of DNA helicases essential for genomic stability. Heritable mutations in RecQ Werner syndrome protein (WRN) or RecQ Bloom syndrome protein (BLM) cause remarkably elevated cancer predispositions and WRN mutations cause an additional aging phenotype. WRN and BLM have divergent roles; yet, both may act as tumor suppressor proteins and maintain genetic integrity by functioning with DNA replication and double-strand break repair proteins. Integrated structural, mutational, and biochemical analyses in the Yannone and Tainer labs will address several unanswered questions as to how WRN and BLM act in preserving genome integrity.
We aim to define at the molecular level how WRN and BLM detect and bind DNA substrate, open and unwind target DNA, cleave and resolve DNA intermediates, and coordinate initial protein hand-offs to aid DNA replication and repair pathways. To accomplish this and test specific hypotheses on the molecular basis for WRN and BLM activities, we will biochemically and structurally characterize WRN and BLM components plus their complexes with DNA and key protein partners. Systematic structural and mutational analyses will define functional conformational states and interfaces and suggest mutations to uncouple DNA and/or protein binding events that modulate WRN and BLM activities. We will define the consequences of WRN and BLM conformations and interactions by protein structural studies, biochemical assays in vitro, and functional in vivo assays with our collaborators. These proposed experiments will create a molecular picture of the functional states, protein-DNA, and protein-protein interactions that orchestrate WRN- and BLM-mediated DNA metabolism. Taken together, the anticipated results will provide a detailed molecular understanding of processes underlying the aging and cancer predispositions associated with WRN and BLM helicase deficiencies and create a paradigm for RecQ helicase activities in choreographing replication, recombination and repair events to avoid cancer and aging.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA104660-03
Application #
7092066
Study Section
Special Emphasis Panel (ZRG1-CDF-2 (90))
Program Officer
Knowlton, John R
Project Start
2004-07-01
Project End
2009-04-30
Budget Start
2006-05-01
Budget End
2007-04-30
Support Year
3
Fiscal Year
2006
Total Cost
$308,616
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Munoz, Denise P; Kawahara, Misako; Yannone, Steven M (2013) An autonomous chromatin/DNA-PK mechanism for localized DNA damage signaling in mammalian cells. Nucleic Acids Res 41:2894-906
Trego, Kelly S; Chernikova, Sophia B; Davalos, Albert R et al. (2011) The DNA repair endonuclease XPG interacts directly and functionally with the WRN helicase defective in Werner syndrome. Cell Cycle 10:1998-2007
Mohapatra, Susovan; Kawahara, Misako; Khan, Imran S et al. (2011) Restoration of G1 chemo/radioresistance and double-strand-break repair proficiency by wild-type but not endonuclease-deficient Artemis. Nucleic Acids Res 39:6500-10
Perry, J Jefferson P; Asaithamby, Aroumougame; Barnebey, Adam et al. (2010) Identification of a coiled coil in werner syndrome protein that facilitates multimerization and promotes exonuclease processivity. J Biol Chem 285:25699-707
Heideker, J; Perry, J J P; Boddy, M N (2009) Genome stability roles of SUMO-targeted ubiquitin ligases. DNA Repair (Amst) 8:517-24
Xiao, Zheng; Yannone, Steven M; Dunn, Elizabeth et al. (2009) A novel missense RAG-1 mutation results in T-B-NK+ SCID in Athabascan-speaking Dine Indians from the Canadian Northwest Territories. Eur J Hum Genet 17:205-12
Xiao, Zheng; Dunn, Elizabeth; Singh, Kanal et al. (2009) A non-leaky Artemis-deficient mouse that accurately models the human severe combined immune deficiency phenotype, including resistance to hematopoietic stem cell transplantation. Biol Blood Marrow Transplant 15:1-11
Perry, J Jefferson P; Harris, Rodney M; Moiani, Davide et al. (2009) p38alpha MAP kinase C-terminal domain binding pocket characterized by crystallographic and computational analyses. J Mol Biol 391:1-11
Prudden, John; Perry, J Jefferson P; Arvai, Andrew S et al. (2009) Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol 16:509-16
Pebernard, Stephanie; Perry, J Jefferson P; Tainer, John A et al. (2008) Nse1 RING-like domain supports functions of the Smc5-Smc6 holocomplex in genome stability. Mol Biol Cell 19:4099-109

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