Identification of recurrent chromosomal aberrations is important for diagnosis, prognosis, and therapy of most hematological malignancies. Due to difficulties with culture of tumor cells, low mitotic index, poor chromosomal morphologies, and low prevalence, it takes tremendous effort and time for a cytogenetic clinician to obtain a sufficient number of analyzable metaphase cells under microscope before he/she can make an accurate clinical diagnosis. This process is not only very inefficient but also subject to human errors. In order to improve the efficiency and accuracy of leukemia diagnosis, we propose to develop a computer aided chromosome imaging technique. Specifically, we will develop an innovative high-speed microscopic imaging system based on a time-delay-integration technique. The system can scan the entire sample-slide at high magnification to obtain high resolution digital images to reveal metaphase chromosomes as required by clinical diagnosis. We will also develop a novel computer aided diagnosis (CAD) scheme including four specific modules to (1) detect analyzable metaphase chromosome cells, (2) segment overlapped chromosomes, (3) identify and classify distorted chromosomes associated with cancer cells, and (4) predict the cancer prognosis. After identification and segmentation of analyzable chromosomes, we will compute and search for the effective and robust image features. Genetic algorithm will be used to train and optimize an artificial neural network and a Bayesian belief network for the classification and prediction tasks, respectively. Using the integrated CAD workstation, we will conduct an observer performance study to assess the performance of the technique and its clinical feasibility. In summary, the proposed imaging technique is highly efficient, and no or only minimal human interventions are required from initial slide-scanning up to the presentation of CAD results. With such a new computerized clinical tool, cytogeneticists can effectively focus their efforts on analyzing/verifying chromosomal abnormal patterns and making final diagnostic decisions. It is therefore expected that the proposed technology can significantly improve the efficiency and accuracy of cancer (i.e., leukemia) diagnosis. The proposed technique has significant clinical potentials in monitoring therapeutic efficacy of cancer treatment as well.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA115320-04
Application #
7609064
Study Section
Special Emphasis Panel (ZRG1-SBIB-S (03))
Program Officer
Ossandon, Miguel
Project Start
2006-07-14
Project End
2011-05-31
Budget Start
2009-06-01
Budget End
2010-05-31
Support Year
4
Fiscal Year
2009
Total Cost
$308,319
Indirect Cost
Name
University of Oklahoma Norman
Department
Engineering (All Types)
Type
Schools of Engineering
DUNS #
848348348
City
Norman
State
OK
Country
United States
Zip Code
73019
Ren, Liqiang; Li, Zheng; Li, Yuhua et al. (2013) The impact of the condenser on cytogenetic image quality in digital microscope system. Anal Cell Pathol (Amst) 36:45-59
Qiu, Yuchen; Chen, Xiaodong; Li, Yuhua et al. (2013) Evaluations of auto-focusing methods under a microscopic imaging modality for metaphase chromosome image analysis. Anal Cell Pathol (Amst) 36:37-44
Li, Zheng; Li, Shibo; Bin, Zheng et al. (2012) Potential clinical impact of three-dimensional visualization for fluorescent in situ hybridization image analysis. J Biomed Opt 17:050501
Wang, Xingwei; Chen, Xiaodong; Li, Yuhua et al. (2012) Fluorescence in situ hybridization (FISH) signal analysis using automated generated projection images. Anal Cell Pathol (Amst) 35:395-405
Qiu, Yuchen; Chen, Xiaodong; Li, Yuhua et al. (2012) Impact of the optical depth of field on cytogenetic image quality. J Biomed Opt 17:96017-1
Wang, Xingwei; Zheng, Bin; Li, Shibo et al. (2010) Automated identification of abnormal metaphase chromosome cells for the detection of chronic myeloid leukemia using microscopic images. J Biomed Opt 15:046026
Wang, Xingwei; Zheng, Bin; Li, Shibo et al. (2009) Automated classification of metaphase chromosomes: optimization of an adaptive computerized scheme. J Biomed Inform 42:22-31
Kim, Young Mi; Yang, Shihe; Xu, Weihong et al. (2008) Continuous in vitro exposure to low-dose genistein induces genomic instability in breast epithelial cells. Cancer Genet Cytogenet 186:78-84
Wang, Xingwei; Li, Shibo; Liu, Hong et al. (2008) Automated identification of analyzable metaphase chromosomes depicted on microscopic digital images. J Biomed Inform 41:264-71
Xu, Weihong; Lu, Xianglan; Kim, YoungMi et al. (2008) Deletion of 14q24.1 approximately q24.3 in a patient with acute lymphoblastic leukemia: a hidden chromosomal anomaly detected by array-based comparative genomic hybridization. Cancer Genet Cytogenet 185:43-6

Showing the most recent 10 out of 12 publications