There are three major clinical problems in treating cutaneous T-cell lymphomas (CTCL), non- Hodgkin's lymphomas characterized by inflammatory skin lesions. First, diagnosis of early-stage CTCL is difficult and takes on average six years, often delaying diagnosis until the disease becomes more aggressive. Second, 20% of early stage patients go on to progressive, often lethal disease and there is no validated way to identify patients who will progress. Third, CTCL is both a skin lymphoma and inflammatory disease. Clinical assessment of skin inflammation doesn't necessarily reflect malignant T cell burden, making determination of responses to therapy difficult. We provide pilot data that high throughput TCR CDR3 sequencing (HTS) can diagnose CTCL even in its earliest stages by identifying and quantifying malignant clonal T cells in skin lesions. We show that it permits for the first time comprehensive studies of the malignant and benign T cell infiltrate in skin lesions that may lead to methods for identifying patients who will progress. Lastly, the ability of this technique to quantify malignant T cells makes it vastly superior to clinical examination as a way to assess responses to therapy. HTS is available as both a research and clinical test but is not currently used in CTCL clinics because its utility and reliability in CTCL have not been demonstrated. We have assembled a multi-institutional, multidisciplinary collaborative team of industrial scientists, physician scientist's expert in CTCL translational research and physician's expert in the care of CTCL patients. Our Industrial Partner, Adaptive Biotechnologies, is a pioneer in HTS technology. Our Academic Partner, Brigham and Women's Hospital at Harvard Medical School, is a world recognized center for CTCL translational research. We have forged a collaboration with three of the top CTCL Clinical Care Centers in the nation to identify and supply patient samples.
In Aim 1, we propose experiments designed to demonstrate that evaluation of the malignant clone, combined with percentages of the top five benign clones, definitively diagnoses CTCL even in its earliest stages and discriminates it from benign inflammatory skin diseases.
In Aim 2, we will evaluate immune based parameters predictive of progression in other cancers to determine if they can identify patients who will develop progressive CTCL.
In Aim 3, we will utilize HTS in three separate clinical trials to definitively demonstrate its superiority to clinical examination in assessing responses to therapy. The goal of this proposal is to demonstrate that HTS can revolutionize the way CTCL is diagnosed and monitored, transforming the care of these patients and bringing HTS into common use as a diagnostic and prognostic test in CTCL clinics.

Public Health Relevance

We will demonstrate that high throughput TCR sequencing (HTS) can transform the care of patients with cutaneous T cell lymphoma (CTCL), providing earlier diagnosis, prediction of cancer progression and accurate assessment of responses to therapy. Although HTS is available as a clinical test, it is not currently used in CTCL clinics because its utility has not been demonstrated. If our studies are successful, they will improve the way CTCL is diagnosed and followed and will bring HTS testing into standard and routine use in CTCL clinics.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA203721-03
Application #
9460470
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Agrawal, Lokesh
Project Start
2016-04-23
Project End
2021-03-31
Budget Start
2018-04-01
Budget End
2019-03-31
Support Year
3
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Brigham and Women's Hospital
Department
Type
DUNS #
030811269
City
Boston
State
MA
Country
United States
Zip Code
Gehad, Ahmed; Teague, Jessica E; Matos, Tiago R et al. (2018) A primary role for human central memory cells in tissue immunosurveillance. Blood Adv 2:292-298
Park, Chang Ook; Fu, Xiujun; Jiang, Xiaodong et al. (2018) Staged development of long-lived T-cell receptor ?? TH17 resident memory T-cell population to Candida albicans after skin infection. J Allergy Clin Immunol 142:647-662
Martinez-Escala, Maria Estela; Posligua, Alba L; Wickless, Heather et al. (2018) Progression of undiagnosed cutaneous lymphoma after anti-tumor necrosis factor-alpha therapy. J Am Acad Dermatol 78:1068-1076
de Masson, Adele; O'Malley, John T; Elco, Christopher P et al. (2018) High-throughput sequencing of the T cell receptor ? gene identifies aggressive early-stage mycosis fungoides. Sci Transl Med 10:
Sauder, Maxwell B; O'Malley, John T; LeBoeuf, Nicole R (2017) CD30+ Lymphoproliferative Disorders of the Skin. Hematol Oncol Clin North Am 31:317-334
MacArthur, Kelly M; Jariwala, Neha; Kim, Ellen J et al. (2017) Topical Carmustine as Monotherapy or as Multimodality Therapy for Folliculotropic Mycosis Fungoides. Acta Derm Venereol 97:373-374
Clark, Rachael A; Schlapbach, Christoph (2017) TH9 cells in skin disorders. Semin Immunopathol 39:47-54
Jariwala, Neha; Benoit, Bernice; Kossenkov, Andrew V et al. (2017) TIGIT and Helios Are Highly Expressed on CD4+ T Cells in Sézary Syndrome Patients. J Invest Dermatol 137:257-260
Pan, Youdong; Tian, Tian; Park, Chang Ook et al. (2017) Survival of tissue-resident memory T cells requires exogenous lipid uptake and metabolism. Nature 543:252-256
Benoit, Bernice M; Jariwala, Neha; O'Connor, Geraldine et al. (2017) CD164 identifies CD4+ T cells highly expressing genes associated with malignancy in Sézary syndrome: the Sézary signature genes, FCRL3, Tox, and miR-214. Arch Dermatol Res 309:11-19

Showing the most recent 10 out of 19 publications