The overall goal of the research is to develop solid-state NMR spectroscopy so that it can be used to determine the structures of peptides and proteins in the crystalline solid-state and in membrane bilayers. Synthetic peptides with well-defined structural features and isotopic labels at specific locations will continue to play crucial roles in the development of all new spectroscopic methods. Sample orientation and magic angle sample spinning have different but equally dramatic effects on the spectra. In an oriented sample, a resonance can occur at any frequency within the span of the powder pattern. In the case of magic angle sample spinning, each resonance occurs at its isotropic frequency. We will develop and apply both types of solid-state NMR experiments to peptides, globular proteins, and membrane proteins. Oriented sample solid-state NMR experiments will be improved through the use of a very high field magnet and low sample temperatures. Multidimensional triple-resonance experiments suitable for application to uniformly 13C and 15N labeled proteins will continue to be developed. 1H, 13C, and 15N chemical shift tensors in backbone and side chain sites of peptides will be determined on polycrystalline samples using a three-dimensional correlation experiment; these results will provide essential information for the interpretation of both solution NMR and solid-state NMR experimental results. Having determined the structure of the M2 channel-forming peptide from the Acetylcholine receptor in lipid bilayers, we will utilize the methods of oriented sample NMR to determine the structures of polypeptides that constitute a functional voltage-gated ion channel. Encouraged by recent results obtained with very high-speed sample spinning, we will apply magic angle sample spinning solid-state NMR experiments to peptides and proteins. In particular, we will compare the results obtained from a 79- residue globular protein to those from an 80-residue membrane protein.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Research Project (R01)
Project #
5R01EB002169-23
Application #
6735722
Study Section
Biophysical Chemistry Study Section (BBCB)
Program Officer
Mclaughlin, Alan Charles
Project Start
1982-01-01
Project End
2006-03-31
Budget Start
2004-04-01
Budget End
2006-03-31
Support Year
23
Fiscal Year
2004
Total Cost
$210,231
Indirect Cost
Name
University of California San Diego
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Nevzorov, Alexander A; Park, Sang Ho; Opella, Stanley J (2007) Three-dimensional experiment for solid-state NMR of aligned protein samples in high field magnets. J Biomol NMR 37:113-6
Jones, D H; Opella, S J (2006) Application of Maximum Entropy reconstruction to PISEMA spectra. J Magn Reson 179:105-13
Thiriot, David S; Nevzorov, Alexander A; Opella, Stanley J (2005) Structural basis of the temperature transition of Pf1 bacteriophage. Protein Sci 14:1064-70
Sinha, Neeraj; Grant, Christopher V; Wu, Chin H et al. (2005) SPINAL modulated decoupling in high field double- and triple-resonance solid-state NMR experiments on stationary samples. J Magn Reson 177:197-202
Park, Sang Ho; Opella, Stanley J (2005) Tilt angle of a trans-membrane helix is determined by hydrophobic mismatch. J Mol Biol 350:310-8
Sinha, N; Grant, C V; Rotondi, K S et al. (2005) Peptides and the development of double- and triple-resonance solid-state NMR of aligned samples. J Pept Res 65:605-20
De Angelis, A A; Jones, D H; Grant, C V et al. (2005) NMR experiments on aligned samples of membrane proteins. Methods Enzymol 394:350-82
DeSilva, Tara M; Veglia, Gianluigi; Opella, Stanley J (2005) Solution structures of the reduced and Cu(I) bound forms of the first metal binding sequence of ATP7A associated with Menkes disease. Proteins 61:1038-49
Howell, Stanley C; Mesleh, Michael F; Opella, Stanley J (2005) NMR structure determination of a membrane protein with two transmembrane helices in micelles: MerF of the bacterial mercury detoxification system. Biochemistry 44:5196-206
Thiriot, David S; Nevzorov, Alexander A; Zagyanskiy, Lena et al. (2004) Structure of the coat protein in Pf1 bacteriophage determined by solid-state NMR spectroscopy. J Mol Biol 341:869-79

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