This proposal addresses the need for new stem cell engineering toolsets that can regulate adult stem cell expansion (self-renewal, without differentiation) ex vivo in order to create sufficient numbers of cells for clinical applications. The goals of this proposal are to: 1) develop a computer vision system that tracks in real-time the spatiotemporal histories of cell divisions in vitro in phase-contrast imagery;2) use this data to automatically derive real-time metrics of symmetry, division times, confluence, and predictive population growth models;and, 3) apply this system to develop novel strategies that maximize the yield of adult stem cell expansion in growth factor-mediated conditions. 'Real-time'means that processing is completed 'on-line'in the 15 minute intervals between image acquisitions, and this information is available during cell culture as feedback for process monitoring and control.
In Aim 1, robust image segmentation and tracking of dense cell populations will be achieved using multi-modal cell tracking modules that represent and reason about cell states and motion from different perspectives, and then fuse and coordinate their respective outputs to make collaborative decisions. The multi-modal modules will be formulated for fast implementation on vector-based graphics processing hardware. The system will measure: proliferation, lineage (i.e., parent-daughter relationship), quiescence, and apoptotic states of each cell in culture within developing confluent populations of muscle-derived stem cells (MDSCs), including immortalized pluripotent C2C12, primary mouse MDSCs, and primary human MDSCs.
In Aim 2, the system will be applied to efficient discovery and characterization of cell expansion behaviors and determination of nominal culture conditions to maximize symmetry using bio-printed combinatorial arrays of immobilized growth factors on extracellular matrix substrates.
In Aim 3, real-time monitoring and control of cell expansion will be demonstrated using an adaptive subculturing strategy;the predictive growth model will signal when to suspend cell culture, followed by fluorescent-activated cell sorting to exclude apoptotic or differentiating cells, thus selectively enriching subcultures for cells exhibiting the highest proliferation rates. Maintenance of differentiative potential will be monitored between subcultures using in vitro osteogenesis and myogenesis as paradigm differentiation indices.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Research Project (R01)
Project #
5R01EB007369-03
Application #
7578299
Study Section
Microscopic Imaging Study Section (MI)
Program Officer
Cohen, Zohara
Project Start
2007-05-01
Project End
2011-02-28
Budget Start
2009-03-01
Budget End
2010-02-28
Support Year
3
Fiscal Year
2009
Total Cost
$316,918
Indirect Cost
Name
Carnegie-Mellon University
Department
Engineering (All Types)
Type
Schools of Engineering
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Ker, Dai Fei Elmer; Eom, Sungeun; Sanami, Sho et al. (2018) Phase contrast time-lapse microscopy datasets with automated and manual cell tracking annotations. Sci Data 5:180237
Yin, Zhaozheng; Kanade, Takeo; Chen, Mei (2012) Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation. Med Image Anal 16:1047-62
Yin, Zhaozheng; Ker, Dai Fei; Junkers, Silvina et al. (2011) Data-driven prediction of stem cell expansion cultures. Conf Proc IEEE Eng Med Biol Soc 2011:3577-80
Ker, Elmer D F; Nain, Amrinder S; Weiss, Lee E et al. (2011) Bioprinting of growth factors onto aligned sub-micron fibrous scaffolds for simultaneous control of cell differentiation and alignment. Biomaterials 32:8097-107
Huh, Seungil; Ker, Dai Fei Elmer; Bise, Ryoma et al. (2011) Automated mitosis detection of stem cell populations in phase-contrast microscopy images. IEEE Trans Med Imaging 30:586-96
Yin, Zhaozheng; Ker, Dai Fei Elmer; Kanade, Takeo (2011) Restoring DIC microscopy images from multiple shear directions. Inf Process Med Imaging 22:384-97
Ker, Dai Fei Elmer; Weiss, Lee E; Junkers, Silvina N et al. (2011) An engineered approach to stem cell culture: automating the decision process for real-time adaptive subculture of stem cells. PLoS One 6:e27672
Ker, Elmer D F; Chu, Bur; Phillippi, Julie A et al. (2011) Engineering spatial control of multiple differentiation fates within a stem cell population. Biomaterials 32:3413-22
Miller, Eric D; Li, Kang; Kanade, Takeo et al. (2011) Spatially directed guidance of stem cell population migration by immobilized patterns of growth factors. Biomaterials 32:2775-85
Li, Kang; Kanade, Takeo (2009) Nonnegative mixed-norm preconditioning for microscopy image segmentation. Inf Process Med Imaging 21:362-73

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