Super-resolution microscopy enables biologists to see the previously invisible by circumventing the classical diffraction limit, and holds promise to broadly transform biomedical research. However, current methods offer only limited resolution and multiplexing power, and tend to require either expensive instrumentation or specialized experimental conditions. They thus have not yet been widely adopted in standard biological labs. We propose a simple and robust super-resolution method based on the programmable autonomous blinking of a nucleic acid fluorescent probe. Unlike existing techniques that rely on the externally controlled stochastic blinking of special fluorophores, our technique utilizes programmable autonomous blinking of a nucleic acid (DNA/RNA) probe with prescribed brightness and blinking frequency. This unprecedented level of molecular control on the blinking behavior of the probe will enable an imaging technique that offers high multiplexing power and resolution. Unlike current super-resolution methods, our programmable blinking technique only requires standard instrumentation and is widely applicable and potentially genetically encodable. Development of this technique will bring the performance, usability, and applicability of super-resolution imaging to a new level, and help transform research practice in diverse biomedical fields.
We propose to develop a new super-resolution imaging technique by engineering the blinking behavior of synthetic DNA/RNA imaging probes. Development of this technique will bring the performance, usability, and applicability of super-resolution imaging to a new level, and help transform research practice in diverse biomedical fields.
Xu, Weidong; Yin, Peng; Dai, Mingjie (2018) Super-resolution Geometric Barcoding for Multiplexed miRNA Profiling. Angew Chem Int Ed Engl 57:14075-14079 |
Kim, Jongmin; Yin, Peng; Green, Alexander A (2018) Ribocomputing: Cellular Logic Computation Using RNA Devices. Biochemistry 57:883-885 |
Kishi, Jocelyn Y; Schaus, Thomas E; Gopalkrishnan, Nikhil et al. (2018) Programmable autonomous synthesis of single-stranded DNA. Nat Chem 10:155-164 |
Beliveau, Brian J; Kishi, Jocelyn Y; Nir, Guy et al. (2018) OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes. Proc Natl Acad Sci U S A 115:E2183-E2192 |
Agasti, Sarit S; Wang, Yu; Schueder, Florian et al. (2017) DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging. Chem Sci 8:3080-3091 |
Schueder, Florian; Lara-GutiƩrrez, Juanita; Beliveau, Brian J et al. (2017) Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT. Nat Commun 8:2090 |
Schueder, Florian; Strauss, Maximilian T; Hoerl, David et al. (2017) Universal Super-Resolution Multiplexing by DNA Exchange. Angew Chem Int Ed Engl 56:4052-4055 |
Schaus, Thomas E; Woo, Sungwook; Xuan, Feng et al. (2017) A DNA nanoscope via auto-cycling proximity recording. Nat Commun 8:696 |
Han, Dongran; Qi, Xiaodong; Myhrvold, Cameron et al. (2017) Single-stranded DNA and RNA origami. Science 358: |
Beliveau, Brian J; Boettiger, Alistair N; Nir, Guy et al. (2017) In Situ Super-Resolution Imaging of Genomic DNA with OligoSTORM and OligoDNA-PAINT. Methods Mol Biol 1663:231-252 |
Showing the most recent 10 out of 25 publications