This competitive renewal application seeks to investigate the role of translesion synthesis DNA polymerases in mutagenesis associated with meiotic cell divisions. Unlike somatic mutations that only impact the individual, DNA changes occurring during meiosis are transmitted to the next generations and lead to the development of hereditary diseases. With the childbirth age steadily increasing over the past decades, the frequency of de novo germline mutations in the human population has continuously been on the rise. The resulting hereditary diseases present a significant burden for the individuals, families and the society, since the patients often develop multiple medical problems at an early age and require specialized life-long care. The mechanisms responsible for the generation of germline mutations are poorly understood, as nearly all mechanistic studies of mutagenesis employ mitotic cells. In the previous cycles of this grant, we discovered and explored a novel mutagenesis pathway wherein error-prone DNA polymerase ? (Pol?) is recruited to DNA replication forks stalled at small hairpin DNA structures and facilitates the bypass of these structures, producing a characteristic mutational signature. This pathway is silent in healthy mitotic cells because the robust normal replication machinery is not significantly impeded by the small secondary structures. The Pol?-dependent error-prone structure bypass, however, becomes a factor when intrinsic or environmental stressors promote fork stalling. Unexpectedly, our preliminary data suggested that this pathway is also activated during normal meiosis and is a likely source of recurrent germline mutations in cancer predisposition genes. We will test this hypothesis by pursuing three Specific Aims.
In Aim 1, we will define the contribution of the Pol?-dependent pathway to germline- and meiosis-specific mutagenesis.
In Aim 2, we will use the human POLE gene linked to a hereditary colorectal cancer predisposition syndrome as a model to identify meiosis-specific hotspots of mutagenesis and define their relationship to Pol?-dependent hairpin bypass.
In Aim 3, we will determine the effects of environmental DNA damaging agents and replication inhibitors on the accumulation of Pol?-dependent mutations during gametogenesis. Yeast, mouse and human cell models will be used in these studies, with the yeast system providing the most power for mechanistic analysis, the mouse providing the opportunity to experimentally study mutagenesis during mammalian meiosis in vivo, and the data on human samples establishing the ultimate link to disease. We expect to gain new fundamental knowledge on the mechanism of mutagenesis in the germline that impacts future generations. We also expect to understand the reasons for frequent de novo formation of some disease-causing germline variants and the effects of environmental factors.

Public Health Relevance

Mutations present in the sperm or the egg are passed on to the next generation and can cause severe congenital disorders, including cancer predisposition syndromes. Many such mutations are not originally present in the parents but happen during the formation of the sperm or the egg. This proposal seeks to investigate how these mutations form, as well as the effects of parental age and environmental factors, which, in the long run, could help develop preventive strategies to reduce the incidence of congenital diseases.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Research Project (R01)
Project #
2R01ES015869-11
Application #
9840106
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Heacock, Michelle
Project Start
2009-07-01
Project End
2024-05-31
Budget Start
2019-09-01
Budget End
2020-05-31
Support Year
11
Fiscal Year
2019
Total Cost
Indirect Cost
Name
University of Nebraska Medical Center
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
168559177
City
Omaha
State
NE
Country
United States
Zip Code
68198
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Barbari, Stephanie R; Shcherbakova, Polina V (2017) Replicative DNA polymerase defects in human cancers: Consequences, mechanisms, and implications for therapy. DNA Repair (Amst) 56:16-25
Mertz, T M; Baranovskiy, A G; Wang, J et al. (2017) Nucleotide selectivity defect and mutator phenotype conferred by a colon cancer-associated DNA polymerase ? mutation in human cells. Oncogene 36:4427-4433
Kochenova, Olga V; Bezalel-Buch, Rachel; Tran, Phong et al. (2016) Yeast DNA polymerase ? maintains consistent activity and mutagenicity across a wide range of physiological dNTP concentrations. Nucleic Acids Res :
Mertz, Tony M; Sharma, Sushma; Chabes, Andrei et al. (2015) Colon cancer-associated mutator DNA polymerase ? variant causes expansion of dNTP pools increasing its own infidelity. Proc Natl Acad Sci U S A 112:E2467-76
Kochenova, Olga V; Daee, Danielle L; Mertz, Tony M et al. (2015) DNA polymerase ?-dependent lesion bypass in Saccharomyces cerevisiae is accompanied by error-prone copying of long stretches of adjacent DNA. PLoS Genet 11:e1005110
Northam, Matthew R; Moore, Elizabeth A; Mertz, Tony M et al. (2014) DNA polymerases ? and Rev1 mediate error-prone bypass of non-B DNA structures. Nucleic Acids Res 42:290-306
Kane, Daniel P; Shcherbakova, Polina V (2014) A common cancer-associated DNA polymerase ? mutation causes an exceptionally strong mutator phenotype, indicating fidelity defects distinct from loss of proofreading. Cancer Res 74:1895-901
Kadyrova, Lyudmila Y; Mertz, Tony M; Zhang, Yu et al. (2013) A reversible histone H3 acetylation cooperates with mismatch repair and replicative polymerases in maintaining genome stability. PLoS Genet 9:e1003899
Shah, Kartik A; Shishkin, Alexander A; Voineagu, Irina et al. (2012) Role of DNA polymerases in repeat-mediated genome instability. Cell Rep 2:1088-95

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