The research proposed is aimed at establishing novel methodology to probe peptide solution conformation, and supplementing presently available techniques to deduce this information. Specifically, it is proposed to utilize Raman Optical Activity, which is an extension of chiroptical methods into vibrational spectroscopy, and classical solution phase Raman spectroscopy to investigate coupled vibrational states, which are known from previous theoretical and experimental studies to contain conformational information. These spectroscopic techniques, for which instrumental facilities were recently completed in the applicant's laboratory, will be utilized to study specifically designed, water soluble model peptide such that the spectroscopic information can be interpreted directly in terms of conformational information. To achieve this goal, peptides with specific probe groups will be synthesized and studied. The spectroscopic and synthetic efforts will be accompanied by theoretical work aimed at obtaining a detailed understanding of molecular force field necessary to reproduce the observed coupled vibrational states, and at using Raman and Raman Optical Activity intensity calculations to reproduce the observed spectral features quantitatively. Furthermore, molecular dynamics calculations, will be performed to include solvent effects on the molecular conformation. Thus, the proposed research program represents a novel approach, involving instrument development, spectroscopic, synthetic as well as theoretical efforts, to augment present knowledge of peptide solution conformation, and to develope techniques to deduce this information.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM028619-05
Application #
3275859
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1982-02-01
Project End
1988-01-31
Budget Start
1986-02-01
Budget End
1987-01-31
Support Year
5
Fiscal Year
1986
Total Cost
Indirect Cost
Name
Hunter College
Department
Type
Schools of Arts and Sciences
DUNS #
City
New York
State
NY
Country
United States
Zip Code
10065
Birke, S S; Diem, M (1995) Conformational studies of the smallest structural motifs of DNA detectable via vibrational circular dichroism: cytidylyl-(3'-5')-guanosine and guanylyl-(3'-5')-cytidine. Biophys J 68:1045-9
Xie, P; Zhou, Q; Diem, M (1994) IR circular dichroism of turns in small peptides. Faraday Discuss :233-43
Birke, S S; Moses, M; Kagalovsky, B et al. (1993) Infrared CD of deoxy oligonucleotides. Conformational studies of 5'd(GCGC)3', 5'd(CGCG)3', 5'd(CCGG)3', and 5'd(GGCC)3' in low and high salt aqueous solution. Biophys J 65:1262-71
Xiang, T; Goss, D J; Diem, M (1993) Strategies for the computation of infrared CD and absorption spectra of biological molecules: ribonucleic acids. Biophys J 65:1255-61
Birke, S S; Agbaje, I; Diem, M (1992) Experimental and computational infrared CD studies of prototypical peptide conformations. Biochemistry 31:450-5
Wyssbrod, H R; Diem, M (1992) IR (vibrational) CD of peptide beta-turns: a theoretical and experimental study of cyclo-(-Gly-Pro-Gly-D-Ala-Pro-). Biopolymers 32:1237-42
Zhong, W X; Gulotta, M; Goss, D J et al. (1990) DNA solution conformation via infrared circular dichroism: experimental and theoretical results for B-family polymers. Biochemistry 29:7485-91
Gulotta, M; Goss, D J; Diem, M (1989) IR vibrational CD in model deoxyoligonucleotides: observation of the B----Z phase transition and extended coupled oscillator intensity calculations. Biopolymers 28:2047-58
Lee, O; Roberts, G M; Diem, M (1989) IR vibrational CD in alanyl tripeptide: indication of a stable solution conformer. Biopolymers 28:1759-70