The major objective is to elucidate the mechanism of action of the enzyme systems from two different strains of Pseudomonas that are responsible for the oxidation of toluene and naphthalene to (+)-1(S),2(R)-dihydroxy-3-methyl-3,5-cyclohexadiene and (+)-1(R),2(S)-dihydroxy-1,2-dihydronaphthalene respectively. These unique dioxygenases have no counterparts in eucaryotic organisms and cis-hydroxylation seems to be an important mechanism used by bacteria to degrade aromatic hydrocarbons without forming reactive electrophilic intermediates such as arene oxides. Toluene dioxygenase consists of three protein components that participate in the transfer of electrons to the terminal dioxygenase which forms cis-toluene dihydrodiol. The mechanism of action of this enzyme system will be investigated by determining the nature of the protein interactions between the three components by chemical coupling and spectrophotometric techniques. The nature of electron transfer, substrate binding and oxygen activation in ISPTOL will be determined by spectrophotometric and electron paramagnetic resonance techniques. The structural genes for all three components of toluene dioxygenase will be identified by hybridization with synthetic oligonucleotide probes and cloned into appropriate expression vectors. The nucleotide sequence of each structural gene will be determined by the dideoxy method. High expression vectors containing the cloned genes will be used to overproduce large amounts of each protein in strains of E. coli. These proteins will be used in reconstitution experiments to assemble an active toluene dioxygenase complex with identical properties to the system obtained from P. putida F1. Chemical studies with indan and indene as substrates will be used to investigate the monooxygenase activity of toluene dioxygenase. Naphthalene dioxygenase also consists of three protein components. The properties of these proteins are different to those described for toluene dioxygenase. The mechanism of action of this enzyme will be investigated using similar techniques to those mentioned above for toluene dioxygenase. Particular attention will be paid to the mechanisms of oxidation of indan and indene by naphthalene dioxygenase since preliminary results indicate that desaturase, monoxygenase and dioxygenase reactions are catalyzed by the purified enzyme system.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
7R01GM029909-08
Application #
3277587
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1988-08-01
Project End
1991-11-30
Budget Start
1988-08-01
Budget End
1988-11-30
Support Year
8
Fiscal Year
1988
Total Cost
Indirect Cost
Name
University of Iowa
Department
Type
Schools of Medicine
DUNS #
041294109
City
Iowa City
State
IA
Country
United States
Zip Code
52242
Yu, C L; Liu, W; Ferraro, D J et al. (2007) Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1. J Ind Microbiol Biotechnol 34:311-24
Karlsson, Andreas; Parales, Juan V; Parales, Rebecca E et al. (2005) NO binding to naphthalene dioxygenase. J Biol Inorg Chem 10:483-9
Karlsson, Andreas; Parales, Juanito V; Parales, Rebecca E et al. (2003) Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron. Science 299:1039-42
Boyd, Derek R; Sharma, Narain D; Bowers, Nigel I et al. (2003) Stereochemical and mechanistic aspects of dioxygenase-catalysed benzylic hydroxylation of indene and chromane substrates. Org Biomol Chem 1:1298-307
Yu, C L; Parales, R E; Gibson, D T (2001) Multiple mutations at the active site of naphthalene dioxygenase affect regioselectivity and enantioselectivity. J Ind Microbiol Biotechnol 27:94-103
Wolfe, M D; Parales, J V; Gibson, D T et al. (2001) Single turnover chemistry and regulation of O2 activation by the oxygenase component of naphthalene 1,2-dioxygenase. J Biol Chem 276:1945-53
Carredano, E; Karlsson, A; Kauppi, B et al. (2000) Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding. J Mol Biol 296:701-12
Karlsson, A; Parales, J V; Parales, R E et al. (2000) The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays. J Inorg Biochem 78:83-7
Parales, R E; Lee, K; Resnick, S M et al. (2000) Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme. J Bacteriol 182:1641-9
Gibson, D T; Parales, R E (2000) Aromatic hydrocarbon dioxygenases in environmental biotechnology. Curr Opin Biotechnol 11:236-43

Showing the most recent 10 out of 58 publications