The aim in the proposed research is to determine the atomic three-dimensional structure of a number of peptides that perform a variety of functions such as ion transport, analgesic, toxic, antitoxic and antibiotic by means of single crystal x-ray diffraction analysis. These crystals are composed of molecules containing light atoms only, C, N, O and H. The method of solution will be direct phase determination using the tangent formula and a variety of auxiliary formulas. Biologically active peptides often contain D-amino residues as well as L-amino residues and occur with cyclic backbones as well as linear backbones. Conformations are usually not predictable and are quite unique for different types of peptides. An immediate goal is to determine which factors govern conformation, e.g. amino acid sequence, chirality sequence, length of peptide, polarity of solvent molecules, bound water, ion complexation. The ultimate goal is to correlate structure with function, e.g. to understand the mechanism of ion capture and release by ionophores and ion transport by channel forming peptides. The specific peptide structures to be studied in this proposal are: a dodecapeptide from elastin; gramacidin A; two inactive analogs of the antitoxin antamanide; [Met5]enkephalin; a cyclic analog of enkephalin; a bicyclic nonapeptide; pteroyl hepta-gamma-glutamate and perhaps others.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM030902-05
Application #
3278779
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1982-08-01
Project End
1988-07-31
Budget Start
1986-08-01
Budget End
1987-07-31
Support Year
5
Fiscal Year
1986
Total Cost
Indirect Cost
Name
U.S. Naval Research Laboratory
Department
Type
DUNS #
020060658
City
Washington
State
DC
Country
United States
Zip Code
20375
Karle, Isabella L; Huang, Lulu; Venkateshwarlu, Punna et al. (2009) SUBTLE CONTROL IN SOLUTION AND CRYSTAL STRUCTURES WITH WEAK HYDROGEN BONDS: THE UNUSUAL PROFILE OF DIMETHYL 3, 12-DIOXO-7, 8 DITHIA 4, 11-DIAZABICYCLO[12.2.2]OCTADECA-1(16), 14, 17-TRIENE 5, 10-DICARBOXYLATE (TDA1). Heterocycles 79:471-486
Huang, Lulu; Massa, Lou; Karle, Isabella et al. (2009) Calculation of strong and weak interactions in TDA1 and RangDP52 by the kernel energy method. Proc Natl Acad Sci U S A 106:3664-9
Karle, Isabella L; Ranganathan, Darshan; Kumar, Mittapalli Gopi et al. (2008) Design, synthesis, conformational and membrane ion transport studies of proline-adamantane hybrid cyclic depsipeptides. Biopolymers 89:471-8
Karle, Isabella L; Venkateshwarlu, Punna; Nagaraj, Ramakrishnan et al. (2007) Diphenic acid as a general conformational lock in the design of bihelical structures. Chemistry 13:4253-63
Karle, Isabella L; Venkateshwarlu, P; Ranganathan, S (2006) A robust hybrid peptide crystal formed with weak hydrogen bonds. Biopolymers 84:502-7
Roy, Rituparna S; Gopi, Hosahudya N; Raghothama, Srinivasarao et al. (2006) Hybrid peptide hairpins containing alpha- and omega-amino acids: conformational analysis of decapeptides with unsubstituted beta-, gamma-, and delta-residues at positions 3 and 8. Chemistry 12:3295-302
Karle, I L; Ranganathan, D (2005) An asymmetric conformation of 1,3,5-benzene tricarbonyl [Aib4OMe]3. J Pept Res 65:65-70
Roy, Rituparna S; Gopi, Hosahudya N; Raghothama, S et al. (2005) Peptide hairpins with strand segments containing alpha- and beta-amino acid residues: cross-strand aromatic interactions of facing Phe residues. Biopolymers 80:787-99
Roy, Rituparna S; Karle, Isabella L; Raghothama, S et al. (2004) Alpha,beta hybrid peptides: a polypeptide helix with a central segment containing two consecutive beta-amino acid residues. Proc Natl Acad Sci U S A 101:16478-82
Karle, I L; Prasad, S; Balaram, P (2004) A combined extended and helical backbone for Boc-(Ala-Leu-Ac7c-)2-OMe. J Pept Res 63:175-80

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