The sulfur containing adenine nucleoside derivatives S-adenosylmethionine and 3-phosphoadenosine-5'-phosphosulfate play essential roles in the metabolism of eukaryotic and prokaryotic cells. The goals of this research are to elucidate the active site structures and catalytic mechanisms of two enzymes involved in the biosynthesis of these metabolites. These enzymes are S-adenosylmethionine synthetase (ATP:L-methionine S- adenosyltransferase) and adenosine 5'-phosphosulfate kinase (ATP: adenosine 5'-phosphosulfate 3'-phosphotransferase). In both cases the enzymes from Escherichia coli will be investigated since the genes are cloned and the methods of molecular genetics can be applied. Studies of S-adenosylmethionine synthetase will determine the complete free energy profile for the reaction by presteady state kinetic methods. The conformation and dynamics of enzyme-bound S-adenosylmethionine will be determined by proton and deuterium NMR. To elucidate the mechanistic roles of the two required divalent metal ion activators, the ligands to the active site bound metal ions will be determined by paramagnetic resonance methods using Mn(II) and VO2+ as probes; magnetic interactions with isotopically labelled substrates and enzyme will be measured. The monomeric S-adenosylmethionine synthetase produced by the metX gene will be purified and characterized. The cloned metX gene will be sequenced for comparison with the known sequence of the metK gene which codes for the tetrameric S-adenosylmethionine synthetase that has previously been studied. The roles for particular amino acid residues in the two chemical reactions which are catalyzed at the same active site will be determined using random and site directed mutagenesis of the cloned metK gene. Studies of adenosine 5'-phosphosulfate kinase will determine the rate constants for each step in the reaction using presteady state kinetics and isotope trapping experiments. Whether the phosphorylated enzyme formed in the reaction is an obligatory intermediate will be determined. Site directed mutagenesis will be used to remove the phosphorylation site, and the ability of the mutant enzyme to catalyze phosphoryl transfer will be evaluated. NMR and EPR studies will be used to elucidate the rationale for formation of a phosphorylated enzyme. Spectroscopic studies will reveal whether there is substantial separation between the substrate binding sites, and the mobility of the phosphoryl group of E-P. The roles of the divalent metal ions which are required for activity will be determined from paramagnetic resonance experiments which will reveal the ligands to the metal ions and the distance between them.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM031186-09
Application #
3279115
Study Section
Physical Biochemistry Study Section (PB)
Project Start
1982-07-01
Project End
1995-06-30
Budget Start
1990-07-01
Budget End
1991-06-30
Support Year
9
Fiscal Year
1990
Total Cost
Indirect Cost
Name
Institute for Cancer Research
Department
Type
DUNS #
872612445
City
Philadelphia
State
PA
Country
United States
Zip Code
19111
Garrido, Francisco; Taylor, John C; Alfonso, Carlos et al. (2012) Structural basis for the stability of a thermophilic methionine adenosyltransferase against guanidinium chloride. Amino Acids 42:361-73
Bhat, Krishna L; Markham, George D; Larkin, Joseph D et al. (2011) Thermodynamics of boroxine formation from the aliphatic boronic acid monomers R-B(OH)2 (R = H, H3C, H2N, HO, and F): a computational investigation. J Phys Chem A 115:7785-93
Pajares, MarĂ­a A; Markham, George D (2011) Methionine adenosyltransferase (s-adenosylmethionine synthetase). Adv Enzymol Relat Areas Mol Biol 78:449-521
Markham, George D; Takusagawa, Fusao; Dijulio, Anthony M et al. (2009) An investigation of the catalytic mechanism of S-adenosylmethionine synthetase by QM/MM calculations. Arch Biochem Biophys 492:82-92
Taylor, John C; Bock, Charles W; Takusagawa, Fusao et al. (2009) Discovery of novel types of inhibitors of S-adenosylmethionine synthesis by virtual screening. J Med Chem 52:5967-73
Garrido, Francisco; Alfonso, Carlos; Taylor, John C et al. (2009) Subunit association as the stabilizing determinant for archaeal methionine adenosyltransferases. Biochim Biophys Acta 1794:1082-90
Larkin, Joseph D; Markham, George D; Milkevitch, Matt et al. (2009) Computational investigation of the oxidative deboronation of boroglycine, H2N-CH2-B(OH)2, Using H2O and H2O2. J Phys Chem A 113:11028-34
Markham, G D; Pajares, M A (2009) Structure-function relationships in methionine adenosyltransferases. Cell Mol Life Sci 66:636-48
Lawrence, Sarah H; Ramirez, Ursula D; Tang, Lei et al. (2008) Shape shifting leads to small-molecule allosteric drug discovery. Chem Biol 15:586-96
Larkin, Joseph D; Bhat, Krishna L; Markham, George D et al. (2008) A computational characterization of boron-oxygen multiple bonding in HN=CH-CH=CH-NH-BO. J Phys Chem A 112:8446-54

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