The study of peroxide reactions becomes a major effort of this project in view of the ubiquity of peroxide in living cells and the new knowledge of the reaction of the unbridged form of cytochrome oxidase with peroxide. These are modelled by the reaction of the intermediates with peroxide, with hydrogen, alkyal and other peroxides, as oxidants and with a variety of heavy-atom-labelled substrates as reductants. The intermediates were studied in trapped states at low temperatures and at physiological temperatures in real time using rapid flow methods (regenerative flow). Horseradish peroxidase is of most interest because it forms two types of intermediates; as does lacto-peroxidase. In the case of those forming a single intermediate, yeast peroxidase and catalase are seriously to be considered, together with chloroperoxidase. Thus in this specific proposal, the structures of intermediates will be studied in the trapped state, and the relationship of these structures to their function will be demonstrated in room temperature rapid flow studies, with concomitant optical and epr monitoring of sample properties. Where possible, advantage will be taken of ongoing X-ray crystallography, magnetic and spin resonance methods, as well as Raman spectroscopic methods in order to ensure that conclusions based upon X-ray absorption spectroscopy are consistent with these other approaches. The results are expected to be significant in two respects: 1) the specific determination of the extent to which these compounds are appropriate models for the peroxidatic reaction of cytochrome oxidase and 2) the generalities of common mechanisms for the utilization of peroxide in biological systems.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM033165-04
Application #
3282550
Study Section
Biophysics and Biophysical Chemistry B Study Section (BBCB)
Project Start
1983-08-01
Project End
1989-11-30
Budget Start
1986-12-01
Budget End
1987-11-30
Support Year
4
Fiscal Year
1987
Total Cost
Indirect Cost
Name
University City Science Center
Department
Type
DUNS #
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Naqui, A; Powers, L; Lundeen, M et al. (1988) On the environment of zinc in beef heart cytochrome c oxidase: an x-ray absorption study. J Biol Chem 263:12342-5
Kumar, C; Naqui, A; Powers, L et al. (1988) Does the peroxide compound of cytochrome oxidase contain a ferryl iron? J Biol Chem 263:7159-63
Powers, L; Chance, B; Ching, Y C et al. (1987) Structure of the copper sites in membrane-bound cytochrome c oxidase. J Biol Chem 262:3160-4
Li, Y; Naqui, A; Frey, T G et al. (1987) A new procedure for the purification of monodisperse highly active cytochrome c oxidase from bovine heart. Biochem J 242:417-23
Powers, L; Chance, B; Chance, M et al. (1987) Kinetic, structural, and spectroscopic identification of geminate states of myoglobin: a ligand binding site on the reaction pathway. Biochemistry 26:4785-96
Naqui, A; Chance, B (1986) Enhanced superoxide dismutase activity of pulsed cytochrome oxidase. Biochem Biophys Res Commun 136:433-7
Chance, M; Powers, L; Kumar, C et al. (1986) X-ray absorption studies of myoglobin peroxide reveal functional differences between globins and heme enzymes. Biochemistry 25:1259-65
Chance, M; Powers, L; Poulos, T et al. (1986) Cytochrome c peroxidase compound ES is identical with horseradish peroxide compound I in iron-ligand distances. Biochemistry 25:1266-70
Copeland, R A; Naqui, A; Chance, B et al. (1985) Resonance Raman spectroscopy and enhanced photoreducibility for the 420 nm pulsed form of cytochrome oxidase. FEBS Lett 182:375-9