The overall objective of the research proposed in this grant is to elucidate the biochemical and regulatory mechanisms of a eukaryotic transposable element in a higher metazoan using an integrated approach that combines biochemistry, genetics and molecular biology. Our efforts will focus on understanding the biochemical mechanism of P element transposition and how these eukaryotic transposable DNA elements tie into the DNA repair pathways of the fruit fly, Drosophila melanogaster. The experiments in this proposal will provide necessary information for the development of P elements as genetic tools in other organisms. In order to accomplish our overall objective, we will: 1. Analyze the phenotypes of mutant P element transposase proteins using an in vivo excision assay. 2. Analyze the biochemical properties of wild type and mutant transposase proteins; further develop biochemical assays for their activities. 3. Analyze the biochemical effects of phosphorylation of the transposase protein; identify the kinases involved in these phosphorylation events. 4. Determine what role GTP binding and/or hydrolysis play in P element transposition. 5. Analyze the role of the Drosophila proteins IRBP, DmKup70, DmKup80 and DmDNA-PKcs (p470) in P element transposition. 6. Facilitate the development of P element-mediated transposition as a genetic tool in other organisms.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM048862-12
Application #
6636071
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Rhoades, Marcus M
Project Start
1992-07-01
Project End
2006-06-30
Budget Start
2003-07-01
Budget End
2006-06-30
Support Year
12
Fiscal Year
2003
Total Cost
$342,328
Indirect Cost
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Francis, Malik Joseph; Roche, Siobhan; Cho, Michael Jeffrey et al. (2016) Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis. Proc Natl Acad Sci U S A 113:13003-13008
Majumdar, Sharmistha; Rio, Donald C (2015) P Transposable Elements in Drosophila and other Eukaryotic Organisms. Microbiol Spectr 3:MDNA3-0004-2014
Majumdar, Sharmistha; Singh, Anita; Rio, Donald C (2013) The human THAP9 gene encodes an active P-element DNA transposase. Science 339:446-8
Sabogal, Alex; Lyubimov, Artem Y; Corn, Jacob E et al. (2010) THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves. Nat Struct Mol Biol 17:117-23
Huang, Shirley H; Rio, Donald C; Marletta, Michael A (2007) Ligand binding and inhibition of an oxygen-sensitive soluble guanylate cyclase, Gyc-88E, from Drosophila. Biochemistry 46:15115-22
Weinert, Brian T; Rio, Donald C (2007) DNA strand displacement, strand annealing and strand swapping by the Drosophila Bloom's syndrome helicase. Nucleic Acids Res 35:1367-76
Remus, Dirk; Blanchette, Marco; Rio, Donald C et al. (2005) CDK phosphorylation inhibits the DNA-binding and ATP-hydrolysis activities of the drosophila origin recognition complex. J Biol Chem 280:39740-51
Weinert, Brian T; Min, Bosun; Rio, Donald C (2005) P element excision and repair by non-homologous end joining occurs in both G1 and G2 of the cell cycle. DNA Repair (Amst) 4:171-81
Tang, Mei; Cecconi, Ciro; Kim, Helen et al. (2005) Guanosine triphosphate acts as a cofactor to promote assembly of initial P-element transposase-DNA synaptic complexes. Genes Dev 19:1422-5
Beall, Eileen L; Mahoney, Matthew B; Rio, Donald C (2002) Identification and analysis of a hyperactive mutant form of Drosophila P-element transposase. Genetics 162:217-27

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