The glycopeptide antibiotics of the vancomycin family are potent antibacterial agents that can cure life-threatening bacterial infections by complexation of the D-Ala-D-Ala termini of peptidoglycan intermediates. The dramatic rise in resistance to vancomycin by grain positive pathogens (e.g., Vancomycin Resistant Enterococci) impels investigation into routes to more effective vancomycin analogs. Given the low likelihood of practical total syntheses, understanding of the enzymatic assembly of these nonribosomal peptide antibiotics offers prospect for subsequent reprogramming for combinatorial biosynthesis. This proposal deals with three phases of the enzymatic biosynthesis of vancomycin: (1) the beginning stages of the Nonribosomal Peptide Synthetase (NRPS) assembly line that makes the initial acyclic heptapeptide aglycone of vancomycin family members; (2) the post NRPS enzymatic tailoring of the heptapeptide, including oxidative crosslinking at the aryl side chains of residues 2,4,6,5 and 7, chlorination at 2 and 6, and glycosylation at 4 and 6; (3) the biogenesis of the 4-OH-phenylglycine incorporated at residues 4 and 5 of the core and 3,5-dihydroxyphenylglycine incorporated at residue 7. These aromatic amino acids are key sites for the crosslinking that produces the rigid cup-shaped architecture of the crosslinked core that enables recognition of the peptidoglycan termini and antibiotic action.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM049338-12
Application #
6726771
Study Section
Biochemistry Study Section (BIO)
Program Officer
Ikeda, Richard A
Project Start
1993-04-01
Project End
2005-03-31
Budget Start
2004-04-01
Budget End
2005-03-31
Support Year
12
Fiscal Year
2004
Total Cost
$478,554
Indirect Cost
Name
Harvard University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
047006379
City
Boston
State
MA
Country
United States
Zip Code
02115
Khosla, Chaitan; Herschlag, Daniel; Cane, David E et al. (2014) Assembly line polyketide synthases: mechanistic insights and unsolved problems. Biochemistry 53:2875-83
Walsh, Christopher T; Haynes, Stuart W; Ames, Brian D et al. (2013) Short pathways to complexity generation: fungal peptidyl alkaloid multicyclic scaffolds from anthranilate building blocks. ACS Chem Biol 8:1366-82
Haynes, Stuart W; Gao, Xue; Tang, Yi et al. (2013) Complexity generation in fungal peptidyl alkaloid biosynthesis: a two-enzyme pathway to the hexacyclic MDR export pump inhibitor ardeemin. ACS Chem Biol 8:741-8
Gao, Xue; Jiang, Wei; Jiménez-Osés, Gonzalo et al. (2013) An iterative, bimodular nonribosomal peptide synthetase that converts anthranilate and tryptophan into tetracyclic asperlicins. Chem Biol 20:870-8
Jiang, Wei; Cacho, Ralph A; Chiou, Grace et al. (2013) EcdGHK are three tailoring iron oxygenases for amino acid building blocks of the echinocandin scaffold. J Am Chem Soc 135:4457-66
Walsh, Christopher T; O'Brien, Robert V; Khosla, Chaitan (2013) Nonproteinogenic amino acid building blocks for nonribosomal peptide and hybrid polyketide scaffolds. Angew Chem Int Ed Engl 52:7098-124
Walsh, Christopher T; Wencewicz, Timothy A (2013) Flavoenzymes: versatile catalysts in biosynthetic pathways. Nat Prod Rep 30:175-200
Young, Travis S; Dorrestein, Pieter C; Walsh, Christopher T (2012) Codon randomization for rapid exploration of chemical space in thiopeptide antibiotic variants. Chem Biol 19:1600-10
Parker, Jared B; Walsh, Christopher T (2012) Stereochemical outcome at four stereogenic centers during conversion of prephenate to tetrahydrotyrosine by BacABGF in the bacilysin pathway. Biochemistry 51:5622-32
Cacho, Ralph A; Jiang, Wei; Chooi, Yit-Heng et al. (2012) Identification and characterization of the echinocandin B biosynthetic gene cluster from Emericella rugulosa NRRL 11440. J Am Chem Soc 134:16781-90

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