The long term goals are to understand how viruses interact with chromosomes and how genes for biosynthesis of proteins needed in small amounts are regulated. The health relatedness of these studies on prokaryotic model systems lies in the elucidation of basic mechanisms and in the perspective shed on natural biology of disease-causing viruses by the common features of bacterial and animal virology. The DNA of bacteriophage lambda upstream of the integrase operon will be examined for effects on integration and excision of two elements: a terminator-like sequence tI' that abuts the pI promoter and an open reading frame (ORF-55) upstream from it. Phage constructed to eliminate tI' will be examined for the effect of cII protein in the presence of transcription from pL, to test the hypothesis that tI' functions in the initial transition from the uncommitted to the lysogenic state. The ORF-55 gene expressed from a plasmid will be tested for complementation of the excisionase defect of the lambda crg phage, which has an IS2 insertion in ORF-55. Lambda crg prophages in inverted orientation will be tested for the ability to generate duplications by recombination with the defective gsr' prophage, and the defective prophages of E. coli strains of the ECOR collection will be compared. The properties of purified E. coli biotin sulfoxide reductase and the molecular basis for a newly evolved BDS reductase activity will be determined.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM051117-29
Application #
2392203
Study Section
Microbial Physiology and Genetics Subcommittee 2 (MBC)
Project Start
1978-06-01
Project End
1998-12-31
Budget Start
1997-04-01
Budget End
1998-12-31
Support Year
29
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Stanford University
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
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Karlin, S; Mrazek, J; Campbell, A M (1998) Codon usages in different gene classes of the Escherichia coli genome. Mol Microbiol 29:1341-55
Karlin, S; Campbell, A M; Mrazek, J (1998) Comparative DNA analysis across diverse genomes. Annu Rev Genet 32:185-225
Wang, H; Yang, C H; Lee, G et al. (1997) Integration specificities of two lambdoid phages (21 and e14) that insert at the same attB site. J Bacteriol 179:5705-11
Karlin, S; Mrazek, J; Campbell, A M (1997) Compositional biases of bacterial genomes and evolutionary implications. J Bacteriol 179:3899-913
Blaisdell, B E; Campbell, A M; Karlin, S (1996) Similarities and dissimilarities of phage genomes. Proc Natl Acad Sci U S A 93:5854-9
del Campillo Campbell, A; Campbell, A (1996) Alternative gene for biotin sulfoxide reduction in Escherichia coli K-12. J Mol Evol 42:85-90
Karlin, S; Campbell, A M (1994) Which bacterium is the ancestor of the animal mitochondrial genome? Proc Natl Acad Sci U S A 91:12842-6