The long term objective of this research is to understand the catalytic mechanism of acetyl CoA carboxylase from E. coli. Acetyl CoA carboxylase catalyzes the biotin-dependent carboxylation of acetyl CoA to form malonyl CoA in the first step in fatty acid synthesis. The E. coli form of the enzyme consists of three components: (1) biotin carboxylase which transfers CO2 to biotin, (2) biotin carboxyl carrier protein which contains the biotin cofactor and (3) carboxyltransferase which transfers CO2 from biotin to acetyl CoA to make malonyl CoA. There are three specific aims of this proposal. (1) To determine the roles of active site residues in the catalytic mechanism of biotin carboxylase. The crystal structure of biotin carboxylase has been solved and refined to 1.8 A resolution and represents the first three-dimensional model of a biotin-dependent carboxylase. Three different sets of site-directed mutations will be done. First, residues Glu-211, Glu-288, Asn-290, and Arg-292 will be mutated to determine their role in the formation of the carboxyphosphate intermediate. Second, residues Cys-230 and Lys-238 will be mutated to determine if they act as an ion pair to remove the N1' proton of biotin prior to carboxylation. Third, glycine residues at positions 153, 163, 164, 166, and 168 will be mutated to determine if a domain of biotin carboxylase acts as a lid that closes down on the active site during catalysis. (2) A multi-substrate analog of biotin carboxylase will be synthesized and tested as an inhibitor. The multisubstrate inhibitor will be useful in crystallographic, kinetic, and binding studies. (3) While the determination of the three-dimensional structure of carboxyltransferase is underway, the multiple isotope effect method will be used to distinguish between a stepwise versus a concerted reaction. Mechanistic studies on biotin-dependent enzymes have been lacking. With the availability of a three-dimensional structure of biotin-dependent carboxylase the first structure-function studies are possible and should contribute to understanding the catalytic mechanism of this important class of enzymes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM051261-05
Application #
6386052
Study Section
Biochemistry Study Section (BIO)
Program Officer
Jones, Warren
Project Start
1997-05-01
Project End
2003-10-31
Budget Start
2001-05-01
Budget End
2003-10-31
Support Year
5
Fiscal Year
2001
Total Cost
$95,162
Indirect Cost
Name
Louisiana State University A&M Col Baton Rouge
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
075050765
City
Baton Rouge
State
LA
Country
United States
Zip Code
70803