We propose new solid-state NMR experiments to determine the structure and dynamics of noncrystallizeable proteins which have been immobilized in or on cell-wall surfaces. The versatile REDOR and TEDOR analytical methods that we have developed in the last five years for the accurate determination of internuclear distances (and hence geometry and structure) of freeze-quenched lyophilized protein complexes, and proposed new combined TEDOR-REDOR and TEDOR-TEDOR experiments, are heteronuclear techniques that are directly applicable to cell-wall protein problems. The sensitivity of solid-state NMR for this kind of work already has been established in practical applications on big proteins. We now routinely perform long-range distance measurements on one micromole of a 50-kD labeled protein complex. We propose specific new REDOR/TEDOR solid-state experiments to characterize: (l) magainin peptide antibiotics in multilamellar lipid dispersions; (2) peptidoglycan bridges in intact cell walls of S. aureus; (3) protein-oligosaccharide complexes at cell-cell interfaces; (4) the interfacial site of phospholipase A2 complexes in a hydrated bilayer; and (5) the lipid-binding region of D-lactate dehydrogenase. Structural results from the protein-oligosaccharide experiments will be complemented by direct imaging of the complexes using non-contact atomic force microscopy. All of these practical applications could lead both to new science and new biotechnology, the latter including the use of solid-state NMR to assist in the biorational design of drugs and antibiotics.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM051554-04
Application #
2459578
Study Section
Biophysical Chemistry Study Section (BBCB)
Project Start
1994-08-01
Project End
1998-07-31
Budget Start
1997-08-01
Budget End
1998-07-31
Support Year
4
Fiscal Year
1997
Total Cost
Indirect Cost
Name
Washington University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
062761671
City
Saint Louis
State
MO
Country
United States
Zip Code
63130
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Cegelski, Lynette; Kim, Sung Joon; Hing, Andrew W et al. (2002) Rotational-echo double resonance characterization of the effects of vancomycin on cell wall synthesis in Staphylococcus aureus. Biochemistry 41:13053-8
O'Connor, Robert D; Schaefer, Jacob (2002) Relative CSA-dipolar orientation from REDOR sidebands. J Magn Reson 154:46-52
Kowalewski, T; Holtzman, D M (1999) In situ atomic force microscopy study of Alzheimer's beta-amyloid peptide on different substrates: new insights into mechanism of beta-sheet formation. Proc Natl Acad Sci U S A 96:3688-93
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Goetz, J M; Schaefer, J (1997) Orientational information in solids from REDOR sidebands. J Magn Reson 129:222-3
Yaneva, M; Kowalewski, T; Lieber, M R (1997) Interaction of DNA-dependent protein kinase with DNA and with Ku: biochemical and atomic-force microscopy studies. EMBO J 16:5098-112
Tong, G; Pan, Y; Dong, H et al. (1997) Structure and dynamics of pentaglycyl bridges in the cell walls of Staphylococcus aureus by 13C-15N REDOR NMR. Biochemistry 36:9859-66
Goetz, J M; Schaefer, J (1997) REDOR dephasing by multiple spins in the presence of molecular motion. J Magn Reson 127:147-54

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