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Ragan, Chikako; Zuker, Michael; Ragan, Mark A (2011) Quantitative prediction of miRNA-mRNA interaction based on equilibrium concentrations. PLoS Comput Biol 7:e1001090
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Ragan, Chikako; Cloonan, Nicole; Grimmond, Sean M et al. (2009) Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PLoS One 4:e5745
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Markham, Nicholas R; Zuker, Michael (2008) UNAFold: software for nucleic acid folding and hybridization. Methods Mol Biol 453:3-31
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Markham, Nicholas R; Zuker, Michael (2005) DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res 33:W577-81
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Mathews, David H; Disney, Matthew D; Childs, Jessica L et al. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A 101:7287-92
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Dimitrov, Roumen A; Zuker, Michael (2004) Prediction of hybridization and melting for double-stranded nucleic acids. Biophys J 87:215-26
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Rouillard, Jean-Marie; Zuker, Michael; Gulari, Erdogan (2003) OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. Nucleic Acids Res 31:3057-62
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Zuker, Michael (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-15
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Kidd-Ljunggren, K; Zuker, M; Hofacker, I L et al. (2000) The hepatitis B virus pregenome: prediction of RNA structure and implications for the emergence of deletions. Intervirology 43:154-64
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Zuker, M (2000) Calculating nucleic acid secondary structure. Curr Opin Struct Biol 10:303-10
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Showing the most recent 10 out of 13 publications
