Biochemistry revolves around the chemistry of carbon, but many other elements play vital roles. Sulfur is such an element, with roles in structure, catalysis and metabolism in all organisms. Specifically in humans, homocysteinemia, together with low S-adenosyl methionine levels, has been implicated in coronary artery disease and in atherosclerotic disease. Our goal is to develop sulfur K-edge X-ray absorption near-edge spectroscopy so that it can be used to monitor and to improve our understanding of sulfur metabolism in living systems. There are currently no effective spectroscopic probes of sulfur in biological systems. X-ray absorption spectroscopy will detect all chemical forms of sulfur in a sample, in solid, in aqueous solution or in any other form, and different forms of sulfur display strikingly different spectra. No pre-treatment is needed and the technique is at least potentially non-destructive. The ultimate potential of the work we propose herein is to provide an in vivo probe of metabolic status. To this end, we propose the following specific aims for this initial study: 1. Generate a library of sulfur spectra of a range of biologically significant compounds under a range of physiologically relevant conditions. 2. Develop statistically rigorous curve-fitting routines for evaluation of complex mixtures, and quantitatively evaluate particle size and concentration effects. 3. Evaluate the potential problems from radiation damage, including the requirement for cryo-protection of the sample. 4. Validate our approach by initial studies of simple biological systems where sulfur plays very major roles in metabolism. 5. Apply the developed techniques to more challenging eukaryotic systems. This latter aim may not be achieved in the initial period of the grant.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM057375-02
Application #
6019419
Study Section
Metallobiochemistry Study Section (BMT)
Project Start
1998-08-01
Project End
2001-07-31
Budget Start
1999-08-01
Budget End
2000-07-31
Support Year
2
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Stanford University
Department
Pediatrics
Type
Schools of Medicine
DUNS #
800771545
City
Stanford
State
CA
Country
United States
Zip Code
94305
Pickering, Ingrid J; Sneeden, Eileen Yu; Prince, Roger C et al. (2009) Localizing the chemical forms of sulfur in vivo using X-ray fluorescence spectroscopic imaging: application to onion (Allium cepa) tissues. Biochemistry 48:6846-53
George, Simon J; Drury, Owen B; Fu, Juxia et al. (2009) Molybdenum X-ray absorption edges from 200 to 20,000eV: the benefits of soft X-ray spectroscopy for chemical speciation. J Inorg Biochem 103:157-67
George, Graham N; Gnida, Manuel; Bazylinski, Dennis A et al. (2008) X-ray absorption spectroscopy as a probe of microbial sulfur biochemistry: the nature of bacterial sulfur globules revisited. J Bacteriol 190:6376-83
Rigby, Kevin; Zhang, Limei; Cobine, Paul A et al. (2007) characterization of the cytochrome c oxidase assembly factor Cox19 of Saccharomyces cerevisiae. J Biol Chem 282:10233-42
Gnida, Manuel; Sneeden, Eileen Yu; Whitin, John C et al. (2007) Sulfur X-ray absorption spectroscopy of living mammalian cells: an enabling tool for sulfur metabolomics. In situ observation of uptake of taurine into MDCK cells. Biochemistry 46:14735-41
George, Graham N; Doonan, Christian J; Rothery, Richard A et al. (2007) X-ray absorption spectroscopic characterization of the molybdenum site of Escherichia coli dimethyl sulfoxide reductase. Inorg Chem 46:2-4
Liu, Tong; Ramesh, Arati; Ma, Zhen et al. (2007) CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator. Nat Chem Biol 3:60-8
Popescu, Bogdan F Gh; Pickering, Ingrid J; George, Graham N et al. (2007) The chemical form of mitochondrial iron in Friedreich's ataxia. J Inorg Biochem 101:957-66
Coyne 3rd, H Jerome; Ciofi-Baffoni, Simone; Banci, Lucia et al. (2007) The characterization and role of zinc binding in yeast Cox4. J Biol Chem 282:8926-34
Doonan, Christian J; Kappler, Ulrike; George, Graham N (2006) Structure of the active site of sulfite dehydrogenase from Starkeya novella. Inorg Chem 45:7488-92

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