(Verbatim from the application): The objective of this application is to understand the role of a CHD protein in determination of developmental identity in Arabidopsis thaliana. CHD proteins have been implicated as chromatin remodeling factors are found in many diverse organisms ranging from yeast to man. In Arabidopsis thaliana, the pkl mutation is defective in the gibberellin signal transduction pathway and in the developmental transition form embryo to seedling. PKL has been cloned and codes for a CHD family member. We are interested in understanding the role of this CHD protein in regulation of developmental identity and GA signal transduction. To identify possible mechanisms by which PKL is regulated, expression of PKL transcript and protein will be characterized. Genes will be identified that are directly regulated by PKL and therefore potentially involved in regulation of developmental identity and GA signal transduction. Proteins that interact with PKL will be identified by two-hybrid analysis and affinity chromatography in an attempt to identify potential co-factors that may regulate PKL activity. Additional factors that are involved in regulation of developmental identity, gibberellin signal transduction, and/or chromatin remodeling may be identified based on a genetic screen. By carrying out these experimental aims, it is hoped that a greater understanding will be achieved of the role of CHD proteins in regulation of development in plants and perhaps all eukaryotes.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM059770-05
Application #
6732670
Study Section
Cell Development and Function Integrated Review Group (CDF)
Program Officer
Anderson, James J
Project Start
2000-04-01
Project End
2006-03-31
Budget Start
2004-04-01
Budget End
2006-03-31
Support Year
5
Fiscal Year
2004
Total Cost
$266,867
Indirect Cost
Name
Purdue University
Department
Biochemistry
Type
Schools of Earth Sciences/Natur
DUNS #
072051394
City
West Lafayette
State
IN
Country
United States
Zip Code
47907
Carter, Benjamin; Henderson, James T; Svedin, Elisabeth et al. (2016) Cross-Talk Between Sporophyte and Gametophyte Generations Is Promoted by CHD3 Chromatin Remodelers in Arabidopsis thaliana. Genetics 203:817-29
Ho, Kwok Ki; Zhang, Heng; Golden, Barbara L et al. (2013) PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor. Biochim Biophys Acta 1829:199-210
Bromberger, Joyce T; Schott, Laura L; Matthews, Karen A et al. (2012) Association of past and recent major depression and menstrual characteristics in midlife: Study of Women's Health Across the Nation. Menopause 19:959-66
Zhang, Heng; Bishop, Brett; Ringenberg, Whitney et al. (2012) The CHD3 remodeler PICKLE associates with genes enriched for trimethylation of histone H3 lysine 27. Plant Physiol 159:418-32
Muir, W M; Rosa, G J M; Pittendrigh, B R et al. (2009) A mixture model approach for the analysis of small exploratory microarray experiments. Comput Stat Data Anal 53:1566-1576
Zhang, Heng; Rider Jr, Stanley Dean; Henderson, James T et al. (2008) The CHD3 remodeler PICKLE promotes trimethylation of histone H3 lysine 27. J Biol Chem 283:22637-48
Li, Hui-Chun; Chuang, King; Henderson, James T et al. (2005) PICKLE acts during germination to repress expression of embryonic traits. Plant J 44:1010-22
Rider Jr, Stanley Dean; Hemm, Matthew R; Hostetler, Heather A et al. (2004) Metabolic profiling of the Arabidopsis pkl mutant reveals selective derepression of embryonic traits. Planta 219:489-99
Henderson, Jim T; Li, Hui-Chun; Rider, Stanley Dean et al. (2004) PICKLE acts throughout the plant to repress expression of embryonic traits and may play a role in gibberellin-dependent responses. Plant Physiol 134:995-1005
Dean Rider Jr, Stanley; Henderson, James T; Jerome, Ronald E et al. (2003) Coordinate repression of regulators of embryonic identity by PICKLE during germination in Arabidopsis. Plant J 35:33-43