Relevance to public health: Heterochronic genes control timing of cell differentiation and are related to human cancer genes, but little is known about their mechanism of action. In this proposal, we will identify genes that function with heterochronic genes to control timing of cell differentiation. We predict that these genes are likely to reveal novel development/cancer genes and mechanisms of development/cancer.
Specific Aims : During animal development, tissues and organs form in a particular temporal sequence, but little is known about the mechanisms involved in temporal patterning. In C. elegans, the timing of epidermal seam cell development is regulated such that seam cells divide with a stem cell-like lineage during larval development and terminally differentiate at the adult stage, providing an excellent model for temporal control of cell fate, proliferation and differentiation. A pathway of heterochronic genes, which includes at least 2 microRNAs (miRNAs) and their targets, controls seam cell timing, but the exact mechanisms used by these genes are not understood. To shed light on the temporal patterning mechanisms employed in seam cells, we propose to use the power of C. elegans genetics to identify their targets and effectors, all potentially new heterochronic genes. Ultimately, this work will not only expand our understanding of the mechanisms and genes that contribute to temporal control in C. elegans, but given the homology of C. elegans heterochronic genes to human cancer genes, we believe that this work will be directly applicable to human development and disease, as well as timing in other less well-studied areas, such as aging.
Aim 1 : In previous work, we have shown that hbl-1 controls the timing of seam cell development, providing us with a foothold to understand developmental timing in this powerful model organ. To elucidate the mechanisms used by this transcription factor to control developmental timing, we propose to identify downstream effectors of hbl-1. We predict that these effector genes will be new heterochronic genes themselves, and may point to their human homologues as potential mammalian development and cancer genes.
Aim 2 : We propose to test if hbl-1 interacts with a second transcription factor, EGL-35 to control timing of seam cells.
Aim 3 : We have shown that aging is a timed event under control of heterochronic genes in C. elegans, but little is known about their mechanism for gene control in aging animals. We propose to determine how these age-regulating genes interact with the insulin-signaling pathway, identify their site of action and identify their downstream effector genes (possibly new developmental timing genes) to help elucidate this mechanism. This work may shed light on mechanisms of human aging.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM064701-08
Application #
7867955
Study Section
Development - 1 Study Section (DEV1)
Program Officer
Haynes, Susan R
Project Start
2002-01-01
Project End
2011-06-30
Budget Start
2010-07-01
Budget End
2011-06-30
Support Year
8
Fiscal Year
2010
Total Cost
$277,890
Indirect Cost
Name
Yale University
Department
Physiology
Type
Schools of Arts and Sciences
DUNS #
043207562
City
New Haven
State
CT
Country
United States
Zip Code
06520
Chu, Yu-De; Wang, Wei-Chieh; Chen, Shi-An A et al. (2014) RACK-1 regulates let-7 microRNA expression and terminal cell differentiation in Caenorhabditis elegans. Cell Cycle 13:1995-2009
Jiao, Alan L; Slack, Frank J (2014) RNA-mediated gene activation. Epigenetics 9:27-36
Olsson-Carter, Katherine; Slack, Frank J (2011) The POU transcription factor UNC-86 controls the timing and ventral guidance of Caenorhabditis elegans axon growth. Dev Dyn 240:1815-25
Van Wynsberghe, Priscilla M; Chan, Shih-Peng; Slack, Frank J et al. (2011) Analysis of microRNA expression and function. Methods Cell Biol 106:219-252
Hada, Kazumasa; Asahina, Masako; Hasegawa, Hiroshi et al. (2010) The nuclear receptor gene nhr-25 plays multiple roles in the Caenorhabditis elegans heterochronic gene network to control the larva-to-adult transition. Dev Biol 344:1100-9
Banerjee, Diya; Chen, Xin; Lin, Shin Yi et al. (2010) kin-19/casein kinase I? has dual functions in regulating asymmetric division and terminal differentiation in C. elegans epidermal stem cells. Cell Cycle 9:4748-65
Olsson-Carter, Katherine; Slack, Frank J (2010) A developmental timing switch promotes axon outgrowth independent of known guidance receptors. PLoS Genet 6:
Chan, Shih-Peng; Slack, Frank J (2009) Ribosomal protein RPS-14 modulates let-7 microRNA function in Caenorhabditis elegans. Dev Biol 334:152-60
Roush, Sarah F; Slack, Frank J (2009) Transcription of the C. elegans let-7 microRNA is temporally regulated by one of its targets, hbl-1. Dev Biol 334:523-34
Niwa, Ryusuke; Hada, Kazumasa; Moliyama, Kouichi et al. (2009) C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor. Cell Cycle 8:4147-54

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