Genomic stability is vital to the health of the individual and the preservation of the species. This stability can be threatened by DNA damage from endogenous and exogenous sources. However, mutations, which are heritable sequence changes in the DNA, can also arise as a result of errors made during replication of undamaged DNA. Recently an entirely new family of error-prone DNA polymerases has been discovered. Found in all three domains of life, these polymerases are beneficial because they can replicate past DNA lesions, but they are also potentially detrimental because they make frequent errors, even on undamaged DNA. If the activities of these polymerases are not controlled, they could be a potent source of the mutations that lead to genetic disorders such as cancer. The hypothesis underlying the proposed research is that cells can and must control the activities of their error-prone DNA polymerases. To test this hypothesis, pathways that control the activity of E. colts error-prone DNA polymerase IV (Pol IV) will be found and characterized.
The specific aims are: (1) to identify new regulatory factors that affect the mutagenic activity of Pol IV; (2) to characterize the proteins and pathways regulating Pol IV levels or activity; and, (3) to further characterize the regulatory factors that are already identified. Because Pol IV is a close homologue of eukaryotic error-prone DNA polymerases, higher organisms, including humans, may use similar control mechanisms.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM065175-04
Application #
6930467
Study Section
Chemical Pathology Study Section (CPA)
Program Officer
Portnoy, Matthew
Project Start
2002-04-01
Project End
2008-08-31
Budget Start
2006-03-01
Budget End
2008-08-31
Support Year
4
Fiscal Year
2006
Total Cost
$205,767
Indirect Cost
Name
Indiana University Bloomington
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
006046700
City
Bloomington
State
IN
Country
United States
Zip Code
47401
Mallik, Sarita; Popodi, Ellen M; Hanson, Andrew J et al. (2015) Interactions and Localization of Escherichia coli Error-Prone DNA Polymerase IV after DNA Damage. J Bacteriol 197:2792-809
Sakofsky, Cynthia J; Foster, Patricia L; Grogan, Dennis W (2012) Roles of the Y-family DNA polymerase Dbh in accurate replication of the Sulfolobus genome at high temperature. DNA Repair (Amst) 11:391-400
Williams, Ashley B; Foster, Patricia L (2012) Stress-Induced Mutagenesis. EcoSal Plus 5:
Sladewski, Thomas E; Hetrick, Kyle M; Foster, Patricia L (2011) Escherichia coli Rep DNA helicase and error-prone DNA polymerase IV interact physically and functionally. Mol Microbiol 80:524-41
Foster, Patricia L (2011) Comment on ""A bacterium that can grow by using arsenic instead of phosphorus"". Science 332:1149; author reply 1149
Williams, Ashley B; Hetrick, Kyle M; Foster, Patricia L (2011) Double-Strand Break Repair and Holliday Junction Processing Are Required for Chromosome Processing in Stationary-Phase Escherichia coli Cells. G3 (Bethesda) 1:417-26
Storvik, Kimberly A M; Foster, Patricia L (2011) The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli. J Bacteriol 193:660-9
Williams, Ashley B; Hetrick, Kyle M; Foster, Patricia L (2010) Interplay of DNA repair, homologous recombination, and DNA polymerases in resistance to the DNA damaging agent 4-nitroquinoline-1-oxide in Escherichia coli. DNA Repair (Amst) 9:1090-7
Storvik, Kimberly A M; Foster, Patricia L (2010) RpoS, the stress response sigma factor, plays a dual role in the regulation of Escherichia coli's error-prone DNA polymerase IV. J Bacteriol 192:3639-44
Foster, Patricia L (2007) Stress-induced mutagenesis in bacteria. Crit Rev Biochem Mol Biol 42:373-97

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