|
Maurya, M R; Bornheimer, S J; Venkatasubramanian, V et al. (2009) Mixed-integer nonlinear optimisation approach to coarse-graining biochemical networks. IET Syst Biol 3:24-39
|
|
Maurya, Mano Ram; Subramaniam, Shankar (2007) A kinetic model for calcium dynamics in RAW 264.7 cells: 1. Mechanisms, parameters, and subpopulational variability. Biophys J 93:709-28
|
|
Maurya, Mano Ram; Subramaniam, Shankar (2007) A kinetic model for calcium dynamics in RAW 264.7 cells: 2. Knockdown response and long-term response. Biophys J 93:729-40
|
|
Koyuturk, Mehmet; Szpankowski, Wojciech; Grama, Ananth (2007) Assessing significance of connectivity and conservation in protein interaction networks. J Comput Biol 14:747-64
|
|
Kim, Yohan; Koyuturk, Mehmet; Topkara, Umut et al. (2006) Inferring functional information from domain co-evolution. Bioinformatics 22:40-9
|
|
Koyuturk, Mehmet; Kim, Yohan; Subramaniam, Shankar et al. (2006) Detecting conserved interaction patterns in biological networks. J Comput Biol 13:1299-322
|
|
Pradervand, Sylvain; Maurya, Mano R; Subramaniam, Shankar (2006) Identification of signaling components required for the prediction of cytokine release in RAW 264.7 macrophages. Genome Biol 7:R11
|
|
Szpankowski, Wojciech; Ren, Wenhui; Szpankowski, Lukasz (2005) An optimal DNA segmentation based on the MDL principle. Int J Bioinform Res Appl 1:3-17
|
|
Koyuturk, Mehmet; Grama, Ananth; Szpankowski, Wojciech (2004) An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics 20 Suppl 1:i200-7
|
|
Bina, Minou; Wyss, Phillip; Ren, Wenhui et al. (2004) Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics 84:929-40
|
