It is estimated that over half of drug targets are membrane proteins. Detailed knowledge of membrane protein structure (determined using X-ray diffraction of membrane protein crystals) is needed to understand the processes that are driven by these proteins, and to rationally design new molecules that can serve as drug treatments for many diseases. The supply of membrane protein solution for crystallization is limited, and so crystallization trials must be economically miniaturized in order to increase the success rate of crystallization while reducing the cost of each protein structure. This proposal describes a multi-disciplinary research program that aims to develop and validate microfluidic technology enabling rapid and economical crystallization of membrane proteins, performed on nanoliter scale with direct testing of diffraction quality of crystals.
The specific aims of the program are to: (1) develop and to validate basic plug-based microfluidic technology for accurate and easy fluid manipulation of the various reagents required for membrane protein crystallization, (2) to use the basic microfluidic technology to develop a preloaded cartridge-based approach to crystallization of membrane proteins, and (3) to broaden the impact of the technology developed by: a) developing preloaded cartridges for the promising new crystallization techniques, b) determining the relationship between traditional- and cartridge-based techniques, c) avoiding the potential for damage in handling of crystals by perfecting in-situ diffraction, and d) disseminating the technology to the membrane protein crystal community though our collaborators (Scripps and Argonne National Labs). These tools will be simple and inexpensive to set up and operate, and available to small laboratories. They will also be compatible with automation and robotics. This technology will have a significant impact on the field of membrane protein crystallization, enabling both individual investigators and large centers to determine X-ray crystal structures of new membrane protein targets rapidly and economically.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM075827-05
Application #
7666020
Study Section
Special Emphasis Panel (ZGM1-PPBC-3 (MP))
Program Officer
Preusch, Peter C
Project Start
2005-09-23
Project End
2010-07-31
Budget Start
2009-08-01
Budget End
2010-07-31
Support Year
5
Fiscal Year
2009
Total Cost
$190,230
Indirect Cost
Name
University of Chicago
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
005421136
City
Chicago
State
IL
Country
United States
Zip Code
60637
Hom, Robert A; Chang, Pei-Yun; Roy, Siddhartha et al. (2010) Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain. J Mol Biol 400:145-54
Li, Liang; Du, Wenbin; Ismagilov, Rustem (2010) User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments. J Am Chem Soc 132:106-11
Li, Liang; Fu, Qiang; Kors, Christopher A et al. (2010) A Plug-Based Microfluidic System for Dispensing Lipidic Cubic Phase (LCP) Material Validated by Crystallizing Membrane Proteins in Lipidic Mesophases. Microfluid Nanofluidics 8:789-798
Li, Liang; Ismagilov, Rustem F (2010) Protein crystallization using microfluidic technologies based on valves, droplets, and SlipChip. Annu Rev Biophys 39:139-58
Li, Liang; Du, Wenbin; Ismagilov, Rustem F (2010) Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods. J Am Chem Soc 132:112-9
Du, Wenbin; Li, Liang; Nichols, Kevin P et al. (2009) SlipChip. Lab Chip 9:2286-92
Ponomarenko, Nina S; Li, Liang; Marino, Antony R et al. (2009) Structural and spectropotentiometric analysis of Blastochloris viridis heterodimer mutant reaction center. Biochim Biophys Acta 1788:1822-31
Li, Liang; Nachtergaele, Sigrid; Seddon, Annela M et al. (2008) Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device. J Am Chem Soc 130:14324-8
Li, Liang; Boedicker, James Q; Ismagilov, Rustem F (2007) Using a multijunction microfluidic device to inject substrate into an array of preformed plugs without cross-contamination: comparing theory and experiments. Anal Chem 79:2756-61
Chen, Delai L; Ismagilov, Rustem F (2006) Microfluidic cartridges preloaded with nanoliter plugs of reagents: an alternative to 96-well plates for screening. Curr Opin Chem Biol 10:226-31

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