The broad, long-term objectives of this proposal are: 1) To develop a complete molecular level view of soluble guanylate cyclase (sGC) activation and deactivation by nitric oxide (NO), and 2) To provide a rational basis for the understanding and treatment of human disease through the manipulation of NO.
The specific aims are: 1) The characterization of NO activation and deactivation of sGC, including the nature of the second NO binding site, 2) The characterization of the nucleotide allosteric site, including the role of this site in modulating NO activation of the enzyme, 3) The mapping of the (a) intramolecular and (b) intermolecular protein-protein interactions that are important for sGC function, 4) To develop novel alkyl-NO ligands that are specific for the iron-heme binding site, to be used as spectroscopic probes, potential agonists and/or antagonists, and tools to help identify non-heme NO binding sites, and 5) obtain a crystal structure of sGC. The research design and methods for achieving these goals will be the use of basic molecular biology to acquire purified protein. Then, sGC function will be investigated with biochemical methods, including activity experiments and electronic absorption, resonance Raman, and electron paramagnetic spectroscopy. These studies are directed towards the development of a physiological model of sGC function. Understanding this function is critical for the design of therapeutic agents to treat diseases that involve the NO signaling pathway. Nitric oxide and nitric oxide synthase inhibitors are in clinical use in the treatment of diseases such as septic shock, pulmonary hypertension, male impotence, and angina pectortis. New therapies based on the manipulation of NO function in human biology will continue to have significant impact on human health and disease treatment/prevention. The proposed research examines the details of NO activation of sGC, the heart of this manipulation. ? ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
1R01GM077365-01A2
Application #
7317430
Study Section
Macromolecular Structure and Function A Study Section (MSFA)
Program Officer
Jones, Warren
Project Start
2007-08-01
Project End
2009-07-30
Budget Start
2007-08-01
Budget End
2008-07-31
Support Year
1
Fiscal Year
2007
Total Cost
$222,467
Indirect Cost
Name
University of California Berkeley
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Fernhoff, Nathaniel B; Derbyshire, Emily R; Underbakke, Eric S et al. (2012) Heme-assisted S-nitrosation desensitizes ferric soluble guanylate cyclase to nitric oxide. J Biol Chem 287:43053-62
Gunn, Alexander; Derbyshire, Emily R; Marletta, Michael A et al. (2012) Conformationally distinct five-coordinate heme-NO complexes of soluble guanylate cyclase elucidated by multifrequency electron paramagnetic resonance (EPR). Biochemistry 51:8384-90
Surmeli, Nur Basak; Marletta, Michael A (2012) Insight into the rescue of oxidized soluble guanylate cyclase by the activator cinaciguat. Chembiochem 13:977-81
Derbyshire, Emily R; Marletta, Michael A (2012) Structure and regulation of soluble guanylate cyclase. Annu Rev Biochem 81:533-59
Derbyshire, Emily R; Winter, Michael B; Ibrahim, Mohammed et al. (2011) Probing domain interactions in soluble guanylate cyclase. Biochemistry 50:4281-90
Tran, Rosalie; Weinert, Emily E; Boon, Elizabeth M et al. (2011) Determinants of the heme-CO vibrational modes in the H-NOX family. Biochemistry 50:6519-30
Ibrahim, Mohammed; Derbyshire, Emily R; Marletta, Michael A et al. (2010) Probing soluble guanylate cyclase activation by CO and YC-1 using resonance Raman spectroscopy. Biochemistry 49:3815-23
Derbyshire, Emily R; Deng, Sarah; Marletta, Michael A (2010) Incorporation of tyrosine and glutamine residues into the soluble guanylate cyclase heme distal pocket alters NO and O2 binding. J Biol Chem 285:17471-8
Ibrahim, Mohammed; Derbyshire, Emily R; Soldatova, Alexandra V et al. (2010) Soluble guanylate cyclase is activated differently by excess NO and by YC-1: resonance Raman spectroscopic evidence. Biochemistry 49:4864-71
Yoon, Jungjoo; Herzik Jr, Mark A; Winter, Michael B et al. (2010) Structure and properties of a bis-histidyl ligated globin from Caenorhabditis elegans. Biochemistry 49:5662-70

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