Drosophila embryogenesis is characterized by a highly orchestrated set of events directed by a regulatory gene cascade that creates a coordinate system along the anterior-posterior and dorsal-ventral axes of the embryo. This process must be highly canalized to suppress developmental noise introduced by environmental and mutational variation. But prior to cellularization, the steps in creating morphogenetic landmarks are diffusion mediated and are expected to be sensitive to initial morphogen concentrations, egg morphology, and environmental conditions (such as temperature). These factors vary extensively within and between species. The general aim of the proposal is to investigate the extent and mechanisms by which genetic and environmental variation is suppressed during patterning of the anterior-posterior axis in Drosophila development, and how these canalizing mechanisms respond to evolutionary changes in the coordinate system between species. Experiments will be carried out to: Test the hypothesis that ds-regulatory elements are building blocks of canalization Measure the sensitivity of the anterior-posterior patterning pathway to modulation of expression levels and positioning of its constituent genes Investigate genetic variation in pattern formation among isogenic strains differing in egg size and in development rate. Compare closely related species of Drosophila for the same traits to investigate the evolution of canalization of anterior-posterior patterning. Similar mechanisms to suppress environmental and genetic variation are expected to be acting in human development. The proposed research may lead to a better understanding of concealed gene polymorphism in humans, which when expressed may contribute to individual variation in disease susceptibility or resistance, drug response and side effects, as well as other medically relevant traits.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM078381-03
Application #
7659592
Study Section
Genetic Variation and Evolution Study Section (GVE)
Program Officer
Haynes, Susan R
Project Start
2007-08-01
Project End
2011-07-31
Budget Start
2009-08-01
Budget End
2010-07-31
Support Year
3
Fiscal Year
2009
Total Cost
$348,208
Indirect Cost
Name
University of Chicago
Department
Biology
Type
Schools of Medicine
DUNS #
005421136
City
Chicago
State
IL
Country
United States
Zip Code
60637
Cheung, David; Miles, Cecelia; Kreitman, Martin et al. (2014) Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos. Development 141:124-35
Manu; Ludwig, Michael Z; Kreitman, Martin (2013) Sex-specific pattern formation during early Drosophila development. Genetics 194:163-73
Liu, Junbo; Ma, Jun (2012) Drosophila Bicoid is a substrate of sumoylation and its activator function is subject to inhibition by this post-translational modification. FEBS Lett 586:1719-23
He, Feng; Ren, Jie; Wang, Wei et al. (2012) Evaluating the Drosophila Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts. Bioinformatics 28:970-5
Miles, Cecelia M; Lott, Susan E; Hendriks, Cris L Luengo et al. (2011) Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster. Evolution 65:33-42
Ren, Jie; Jegga, Anil G; Zhang, Minlu et al. (2011) A Drosophila model of the neurodegenerative disease SCA17 reveals a role of RBP-J/Su(H) in modulating the pathological outcome. Hum Mol Genet 20:3424-36
Ludwig, Michael Z; Manu; Kittler, Ralf et al. (2011) Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. PLoS Genet 7:e1002364
He, Bin Z; Holloway, Alisha K; Maerkl, Sebastian J et al. (2011) Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules. PLoS Genet 7:e1002053
Lott, Susan E; Ludwig, Michael Z; Kreitman, Martin (2011) Evolution and inheritance of early embryonic patterning in Drosophila simulans and D. sechellia. Evolution 65:1388-99
He, Feng; Ren, Jie; Wang, Wei et al. (2011) A multiscale investigation of bicoid-dependent transcriptional events in Drosophila embryos. PLoS One 6:e19122

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