Since its inception in 2002, the Dictyostelium Stock Center (DSC) has served the biomedical research and education communities by providing a user-friendly and reliable repository and distribution center for strains from Dictyostelium and related species. The Dicty community and the broader biomedical and educational communities depend on the DSC to facilitate their research. Another important benefit of the DSC is that it provides a ready mechanism for investigators to meet the NIH resource sharing guidelines for materials they have developed. This proposal seeks to continue support for this vital community resource. Although funded as an R01, the DSC is a community resource that facilitates other investigators abilities to make innovative discoveries, while itself innovating by improving storage and recovery methods and the informatics infrastructure for displaying, searching and ordering from the collection. The activities of the DSC improve the overall efficiency of research funds provided to a wide range of investigators by providing a centralized source for strains and materials for Dictyostelium and related species. We propose the following three goals for the next funding period.
Aim 1. Maintain and distribute the DSC collection. The goal of the DSC is to provide a reliable, efficient centralized strain and plasmid repository and distribution center for Dictyostelium species and related amoeba.
Aim 2. Expand the collection, including the GWDI insertional mutant strains. We encourage all Dictyostelid investigators to share their strains, plasmids and other reagents by depositing them in the DSC. Over 21,000 Genome Wide Insertional Mutants (GWDI) were received this year increasing the size of our collection over 10-fold, requiring us to adapt our processes to handle both the increased collection and the attendant increase in order volume.
Aim 3. Improve usability and continue providing integrated database infrastructure. We have created a new DSC front page to access all information, and a new ordering form that streamlines the process, especially for users taking advantage of our new account-based login system. The completion of these aims will assure reliable and on-going preservation and access to these valuable experimental resources, increase the use of research generated materials, improve annotation associated with strains, plasmids and other materials, and lead to the development of innovative interfaces through which user/investigators can share information maximizing the impact of their research.

Public Health Relevance

The eukaryote Dictyostelium discoideum is a relatively simple experimental system that is widely used for research in biomedical, genetic, and environmental domains. The Dictyostelium Stock Center (DSC) provides a centralized resource that preserves and distributes these valuable experimental materials to the broad biomedical research and educational communities. The DSC offers a convenient ?one-stop shopping? experience that provides researchers an efficient means of complying with NIH policies on sharing of research materials derived using NIH funding.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM087371-10
Application #
9819257
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Maas, Stefan
Project Start
2009-04-01
Project End
2021-08-31
Budget Start
2019-09-15
Budget End
2020-08-31
Support Year
10
Fiscal Year
2019
Total Cost
Indirect Cost
Name
Northwestern University at Chicago
Department
Anatomy/Cell Biology
Type
Schools of Medicine
DUNS #
005436803
City
Chicago
State
IL
Country
United States
Zip Code
60611
Basu, Siddhartha; Fey, Petra; Jimenez-Morales, David et al. (2015) dictyBase 2015: Expanding data and annotations in a new software environment. Genesis 53:523-534
Basu, Siddhartha; Fey, Petra; Pandit, Yogesh et al. (2013) DictyBase 2013: integrating multiple Dictyostelid species. Nucleic Acids Res 41:D676-83
Fey, Petra; Dodson, Robert J; Basu, Siddhartha et al. (2013) One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012. Methods Mol Biol 983:59-92
Sucgang, Richard; Kuo, Alan; Tian, Xiangjun et al. (2011) Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum. Genome Biol 12:R20
Gaudet, Pascale; Bairoch, Amos; Field, Dawn et al. (2011) Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res 39:D7-10
Gaudet, Pascale; Bairoch, Amos; Field, Dawn et al. (2011) Towards BioDBcore: a community-defined information specification for biological databases. Database (Oxford) 2011:baq027
Gaudet, Pascale; Fey, Petra; Basu, Siddhartha et al. (2011) dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res 39:D620-4