The current equipment supplement request is for an upgrade of the current mass spectrometry platform to enable nano-scale liquid chromatography. Active grants R01 GM099989 (PI: Lee), and R01s GM130810 and GM121603 (PI: Atkins) jointly request the funds for a Waters M-class HPLC with the corresponding NanoLockSpray ionization source. The upgrade will provide the enhancement in sensitivity to overcome the limits in sensitivity and material requirements that have hindered analytical characterization of numerous the proteins of interest. This will dramatically increase the range of systems and samples we can analyze. The equipment will be shared equally among three NIGMS-funded PIs while being managed and maintained by the School of Pharmacy Mass Spectrometry Facility.

Public Health Relevance

Membrane associated proteins perform a wide range of critical biological processes including drug metabolism, transport, and enable viruses to enter host cells. However, few techniques exist to probe the solution structure of the proteins as they exist in their native membrane environments. This supplement request will enable us to develop a more sensitive analytical platform for rapidly analyzing drug metabolizing enzymes and viral surface glycoprotein structures within native membranes which will provide a much- needed tool for identifying relevant targets for therapeutic intervention.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
3R01GM099989-08S1
Application #
9893408
Study Section
Virology - A Study Section (VIRA)
Program Officer
Sakalian, Michael
Project Start
2012-04-01
Project End
2021-03-31
Budget Start
2019-04-01
Budget End
2020-03-31
Support Year
8
Fiscal Year
2019
Total Cost
Indirect Cost
Name
University of Washington
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
605799469
City
Seattle
State
WA
Country
United States
Zip Code
98195
Benhaim, Mark; Lee, Kelly K; Guttman, Miklos (2018) Tracking Higher Order Protein Structure by Hydrogen-Deuterium Exchange Mass Spectrometry. Protein Pept Lett :
Pardi, Norbert; Hogan, Michael J; Naradikian, Martin S et al. (2018) Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses. J Exp Med 215:1571-1588
Gui, Long; Lee, Kelly K (2018) Influenza Virus-Liposome Fusion Studies Using Fluorescence Dequenching and Cryo-electron Tomography. Methods Mol Biol 1836:261-279
Williams, James A; Gui, Long; Hom, Nancy et al. (2017) Dissection of epitope-specific mechanisms of neutralization of influenza virus by intact IgG and Fab fragments. J Virol :
Strauch, Eva-Maria; Bernard, Steffen M; La, David et al. (2017) Computational design of trimeric influenza-neutralizing proteins targeting the hemagglutinin receptor binding site. Nat Biotechnol 35:667-671
Garcia, Natalie K; Lee, Kelly K (2016) Dynamic Viral Glycoprotein Machines: Approaches for Probing Transient States That Drive Membrane Fusion. Viruses 8:
Liang, Yu; Guttman, Miklos; Davenport, Thaddeus M et al. (2016) Probing the Impact of Local Structural Dynamics of Conformational Epitopes on Antibody Recognition. Biochemistry 55:2197-213
Gui, Long; Ebner, Jamie L; Mileant, Alexander et al. (2016) Visualization and Sequencing of Membrane Remodeling Leading to Influenza Virus Fusion. J Virol 90:6948-6962
Lee, Kelly K; Gui, Long (2016) Dissecting Virus Infectious Cycles by Cryo-Electron Microscopy. PLoS Pathog 12:e1005625
Guttman, Miklos; Lee, Kelly K (2016) Isotope Labeling of Biomolecules: Structural Analysis of Viruses by HDX-MS. Methods Enzymol 566:405-26

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